Binding Isotope Effects for Interrogating Enzyme-Substrate Interactions

被引:4
作者
Stratton, Christopher F. [1 ,2 ]
Poulin, Myles B. [1 ,3 ]
Schramm, Vern L. [1 ]
机构
[1] Albert Einstein Coll Med, Bronx, NY 10467 USA
[2] Pfizer Inc, Groton, CT 06340 USA
[3] Univ Maryland, College Pk, MD 20742 USA
来源
MEASUREMENT AND ANALYSIS OF KINETIC ISOTOPE EFFECTS | 2017年 / 596卷
关键词
TRANSITION-STATE; BONDING ENVIRONMENT; METHYLTRANSFERASE; DESTABILIZATION; GLUCOSE; COMPLEX;
D O I
10.1016/bs.mie.2017.07.019
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Equilibrium binding isotope effects (BIEs) report on the bond vibrational status of enzyme substrates in the Michaelis complex prior to the transition state and how they differ from the solution state. Accordingly, BIEs provide an experimental means of interrogating enzyme-substrate interactions and inform on the influence of enzymemediated atomic distortions in modulating substrate reactivity. In this chapter, we outline a rapid equilibrium dialysis method that our lab has used to measure BIEs for several enzyme systems. Implementation of the rapid equilibrium dialysis approach is described in the context of our recent studies on the substrate bonding environment for the human protein lysine N-methyltransferase NSD2. A summary of BIE effects provides context for the range of experimental values.
引用
收藏
页码:1 / 21
页数:21
相关论文
共 28 条
[1]   Quantifying energetic contributions to ground state destabilization [J].
Anderson, VE .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2005, 433 (01) :27-33
[2]   ISOEFF98. A program for studies of isotope effects using Hessian modifications [J].
Anisimov, V ;
Paneth, P .
JOURNAL OF MATHEMATICAL CHEMISTRY, 1999, 26 (1-3) :75-86
[3]  
[Anonymous], 1960, ISOTOPE EFFECTS REAC
[4]  
[Anonymous], BIOCHEMISTRY
[5]   Binding causes the remote [5′-3H]thymidine kinetic isotope effect in human thymidine phosphorylase [J].
Birck, MR ;
Schramm, VL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (22) :6882-6883
[6]   Human DNMT1 transition state structure [J].
Du, Quan ;
Wang, Zhen ;
Schramm, Vern L. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (11) :2916-2921
[7]  
Frisch M.J., 2016, Gaussian, V16
[8]   KINETIC ISOTOPE EFFECTS ON SUBSTRATE ASSOCIATION - REACTIONS OF PHOSPHOENOLPYRUVATE WITH PHOSPHOENOLPYRUVATE CARBOXYLASE AND PYRUVATE-KINASE [J].
GAWLITA, E ;
CALDWELL, WS ;
OLEARY, MH ;
PANETH, P ;
ANDERSON, VE .
BIOCHEMISTRY, 1995, 34 (08) :2577-2583
[9]   Ground-State Electronic Destabilization via Hyperconjugation in Aspartate Aminotransferase [J].
Griswold, Wait R. ;
Castro, Joan Nieto ;
Fisher, Andrew J. ;
Toney, Michael D. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (20) :8436-8438
[10]  
Lewis B.E., 2006, Isotope Effects in Chemistry and Biology, P1019