An accessible insight into genetic findings for transplantation recipients with suspected genetic kidney disease

被引:12
作者
Wang, Zhigang [1 ]
Xu, Hongen [2 ]
Xiang, Tianchao [3 ,4 ]
Liu, Danhua [2 ,5 ]
Xu, Fei [1 ]
Zhao, Lixiang [1 ]
Feng, Yonghua [1 ]
Xu, Linan [3 ,4 ]
Liu, Jialu [3 ,4 ]
Fang, Ye [3 ,4 ]
Liu, Huanfei [2 ]
Li, Ruijun [2 ]
Hu, Xinxin [2 ]
Guan, Jingyuan [2 ]
Liu, Longshan [6 ]
Feng, Guiwen [1 ]
Shen, Qian [3 ,4 ]
Xu, Hong [3 ,4 ]
Frishman, Dmitrij [7 ]
Tang, Wenxue [2 ,5 ,8 ]
Guo, Jiancheng [2 ,5 ,8 ]
Rao, Jia [3 ,4 ,9 ,10 ]
Shang, Wenjun [1 ]
机构
[1] Zhengzhou Univ, Affiliated Hosp 1, Dept Kidney Transplantat, Zhengzhou, Henan, Peoples R China
[2] Zhengzhou Univ, Acad Med Sci, Precis Med Ctr, Zhengzhou, Henan, Peoples R China
[3] Fudan Univ, Childrens Hosp, Dept Nephrol, Shanghai, Peoples R China
[4] Fudan Univ, Childrens Hosp, Shanghai Key Lab Birth Defect, Shanghai, Peoples R China
[5] Zhengzhou Univ, Affiliated Hosp 2, Zhengzhou, Henan, Peoples R China
[6] Sun Yat Sen Univ, Affiliated Hosp 1, Organ Transplant Ctr, Guangzhou, Peoples R China
[7] Tech Univ Munich, Dept Bioinformat, Freising Weihenstephan, Germany
[8] Zhengzhou Univ, Henan Inst Med & Pharmaceut Sci, Zhengzhou, Henan, Peoples R China
[9] Fudan Univ, Inst Brain Sci, State Key Lab Med Neurobiol, Shanghai, Peoples R China
[10] Fudan Univ, Sch Basic Med Sci, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
MEDICAL GENETICS; AMERICAN-COLLEGE; EXOME; MUTATION; OUTCOMES; GLI2;
D O I
10.1038/s41525-021-00219-3
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Determining the etiology of end-stage renal disease (ESRD) constitutes a great challenge in the context of renal transplantation. Evidence is lacking on the genetic findings for adult renal transplant recipients through exome sequencing (ES). Adult patients on kidney transplant waitlist were recruited from 2017 to 2019. Trio-ES was conducted for the families who had multiple affected individuals with nephropathy or clinical suspicion of a genetic kidney disease owing to early onset or extrarenal features. Pathogenic variants were confirmed in 62 from 115 families post sequencing for 421 individuals including 195 health family members as potential living donors. Seventeen distinct genetic disorders were identified confirming the priori diagnosis in 33 (28.7%) families, modified or reclassified the clinical diagnosis in 27 (23.5%) families, and established a diagnosis in two families with ESRD of unknown etiology. In 14.8% of the families, we detected promising variants of uncertain significance in candidate genes associated with renal development or renal disease. Furthermore, we reported the secondary findings of oncogenes in 4.4% of the patients and known single-nucleotide polymorphisms associated with pharmacokinetics in our cohort to predict the drug levels of tacrolimus and mycophenolate. The diagnostic utility of the genetic findings has provided new clinical insight in most families that help with preplanned renal transplantation.
引用
收藏
页数:9
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[41]   Effect of Whole-Genome Sequencing on the Clinical Management of Acutely Ill Infants With Suspected Genetic Disease A Randomized Clinical Trial [J].
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