共 55 条
Development of a transferable coarse-grained model of polydimethylsiloxane
被引:10
作者:

Cambiaso, Sonia
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy

Rasera, Fabio
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机构:
Univ Roma La Sapienza, Dept Mech & Aerosp Engn, Via Eudossiana 18, I-00184 Rome, Italy Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy

Rossi, Giulia
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h-index: 0
机构:
Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy

Bochicchio, Davide
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h-index: 0
机构:
Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy
机构:
[1] Univ Genoa, Phys Dept, Via Dodecaneso 33, I-16146 Genoa, Italy
[2] Univ Roma La Sapienza, Dept Mech & Aerosp Engn, Via Eudossiana 18, I-00184 Rome, Italy
来源:
基金:
欧盟地平线“2020”;
关键词:
MOLECULAR-DYNAMICS;
FORCE-FIELD;
PDMS;
POLYETHYLENE;
CONFORMATION;
MEMBRANES;
REMOVAL;
SYSTEMS;
PLASMA;
BULK;
D O I:
10.1039/d2sm00939k
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
Polydimethylsiloxane (PDMS) is a popular silicon-based polymer with advanced applications in microfluidics and nanocomposites. The slow dynamics of polymer chains in such complex systems hinders molecular dynamics investigations based on all atom force fields. This limitation can be overcome by exploiting finely tuned coarse-grained (CG) models. This paper develops a transferable CG model of PDMS, compatible with the recent Martini 3 force field, using structural and thermodynamic properties as targets in the parametrization, including a vast set of experimental free energies of transfer. We validate the model transferability by reproducing the correct scaling laws for the PDMS gyration radius in the melt and good and bad solvents. We successfully test the model by reproducing the wetting behavior of water and acetonitrile on PDMS and the phase behavior of a PDMS-peptide triblock copolymer system. This work sets the stage for computational studies involving the interaction between PDMS and many synthetic and biological molecules modeled within the Martini framework.
引用
收藏
页码:7887 / 7896
页数:10
相关论文
共 55 条
[1]
Martini 3 Coarse-Grained Force Field: Small Molecules
[J].
Alessandri, Riccardo
;
Barnoud, Jonathan
;
Gertsen, Anders S.
;
Patmanidis, Ilias
;
de Vries, Alex H.
;
Souza, Paulo C. T.
;
Marrink, Siewert J.
.
ADVANCED THEORY AND SIMULATIONS,
2022, 5 (01)

Alessandri, Riccardo
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
Univ Chicago, Pritzker Sch Mol Engn, Chicago, IL 60637 USA Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands

Barnoud, Jonathan
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
Univ Bristol, Intangible Real Lab, Sch Chem, Bristol BS8 1TS, Avon, England Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands

Gertsen, Anders S.
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Denmark, Dept Energy Convers & Storage, Fysikvej 310, DK-2800 Lyngby, Denmark Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands

论文数: 引用数:
h-index:
机构:

de Vries, Alex H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 7, NL-9747 AG Groningen, Netherlands Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands

Souza, Paulo C. T.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
CNRS, Mol Microbiol & Struct Biochem, MMSB, UMR 5086, 7 Passage Vercors, F-69007 Lyon, France
Univ Lyon, 7 Passage Vercors, F-69007 Lyon, France Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands

Marrink, Siewert J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 7, NL-9747 AG Groningen, Netherlands Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 7, NL-9747 AG Groningen, Netherlands
[2]
The Martini Model in Materials Science
[J].
Alessandri, Riccardo
;
Grunewald, Fabian
;
Marrink, Siewert J.
.
ADVANCED MATERIALS,
2021, 33 (24)

Alessandri, Riccardo
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747 AG Groningen, Netherlands
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 4, NL-9747 AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747 AG Groningen, Netherlands

Grunewald, Fabian
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747 AG Groningen, Netherlands
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 4, NL-9747 AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747 AG Groningen, Netherlands

Marrink, Siewert J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747 AG Groningen, Netherlands
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Nijenborgh 4, NL-9747 AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747 AG Groningen, Netherlands
[3]
Bulk Heterojunction Morphologies with Atomistic Resolution from Coarse-Grain Solvent Evaporation Simulations
[J].
Alessandri, Riccardo
;
Uusitalo, Jaakko J.
;
de Vries, Alex H.
;
Havenith, Remco W. A.
;
Marrink, Siewert J.
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2017, 139 (10)
:3697-3705

Alessandri, Riccardo
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, NL-9747AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands

Uusitalo, Jaakko J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, NL-9747AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands

de Vries, Alex H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, NL-9747AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands

Havenith, Remco W. A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands
Univ Groningen, Stratingh Inst Chem, NL-9747AG Groningen, Netherlands
Univ Ghent, Dept Inorgan & Phys Chem, Ghent Quantum Chem Grp, Krijgslaan 281 (S3), B-9000 Ghent, Belgium Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands

Marrink, Siewert J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands
Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, NL-9747AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, Nijenborgh 4, NL-9747AG Groningen, Netherlands
[4]
Conformation of cyclics and linear chain polymers in bulk by SANS
[J].
Arrighi, V
;
Gagliardi, S
;
Dagger, AC
;
Semlyen, JA
;
Higgins, JS
;
Shenton, MJ
.
MACROMOLECULES,
2004, 37 (21)
:8057-8065

论文数: 引用数:
h-index:
机构:

论文数: 引用数:
h-index:
机构:

Dagger, AC
论文数: 0 引用数: 0
h-index: 0
机构: Heriot Watt Univ, Sch Engn & Phys Sci, Edinburgh EH14 4AS, Midlothian, Scotland

Semlyen, JA
论文数: 0 引用数: 0
h-index: 0
机构: Heriot Watt Univ, Sch Engn & Phys Sci, Edinburgh EH14 4AS, Midlothian, Scotland

Higgins, JS
论文数: 0 引用数: 0
h-index: 0
机构: Heriot Watt Univ, Sch Engn & Phys Sci, Edinburgh EH14 4AS, Midlothian, Scotland

Shenton, MJ
论文数: 0 引用数: 0
h-index: 0
机构: Heriot Watt Univ, Sch Engn & Phys Sci, Edinburgh EH14 4AS, Midlothian, Scotland
[5]
EFFICIENT ESTIMATION OF FREE-ENERGY DIFFERENCES FROM MONTE-CARLO DATA
[J].
BENNETT, CH
.
JOURNAL OF COMPUTATIONAL PHYSICS,
1976, 22 (02)
:245-268

BENNETT, CH
论文数: 0 引用数: 0
h-index: 0
机构:
IBM CORP,THOMAS J WATSON RES CTR,YORKTOWN HTS,NY 10598 IBM CORP,THOMAS J WATSON RES CTR,YORKTOWN HTS,NY 10598
[6]
MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH
[J].
BERENDSEN, HJC
;
POSTMA, JPM
;
VANGUNSTEREN, WF
;
DINOLA, A
;
HAAK, JR
.
JOURNAL OF CHEMICAL PHYSICS,
1984, 81 (08)
:3684-3690

BERENDSEN, HJC
论文数: 0 引用数: 0
h-index: 0

POSTMA, JPM
论文数: 0 引用数: 0
h-index: 0

VANGUNSTEREN, WF
论文数: 0 引用数: 0
h-index: 0

DINOLA, A
论文数: 0 引用数: 0
h-index: 0

HAAK, JR
论文数: 0 引用数: 0
h-index: 0
[7]
Hydrophilization and hydrophobic recovery of PDMS by oxygen plasma and chemical treatment - An SEM investigation
[J].
Bodas, Dhananjay
;
Khan-Malek, Chantal
.
SENSORS AND ACTUATORS B-CHEMICAL,
2007, 123 (01)
:368-373

Bodas, Dhananjay
论文数: 0 引用数: 0
h-index: 0
机构:
CNRS, UMR 6174, LPMO, FEMTO, F-25044 Besancon, France CNRS, UMR 6174, LPMO, FEMTO, F-25044 Besancon, France

Khan-Malek, Chantal
论文数: 0 引用数: 0
h-index: 0
机构:
CNRS, UMR 6174, LPMO, FEMTO, F-25044 Besancon, France CNRS, UMR 6174, LPMO, FEMTO, F-25044 Besancon, France
[8]
Investigation of the wettability of chemically heterogeneous smooth and rough surfaces using molecular dynamics simulation
[J].
Boudaghi, Ahmad
;
Foroutan, Masumeh
.
JOURNAL OF MOLECULAR LIQUIDS,
2022, 348

Boudaghi, Ahmad
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tehran, Kish Int Campus, Tehran, Iran Univ Tehran, Kish Int Campus, Tehran, Iran

Foroutan, Masumeh
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tehran, Coll Sci, Sch Chem, Dept Phys Chem, Tehran, Iran Univ Tehran, Kish Int Campus, Tehran, Iran
[9]
Canonical sampling through velocity rescaling
[J].
Bussi, Giovanni
;
Donadio, Davide
;
Parrinello, Michele
.
JOURNAL OF CHEMICAL PHYSICS,
2007, 126 (01)

Bussi, Giovanni
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland ETH, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland

Donadio, Davide
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland ETH, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland

Parrinello, Michele
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland ETH, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland
[10]
Pervaporation performance of unfilled and filled PDMS membranes and novel SBS membranes for the removal of toluene from diluted aqueous solutions
[J].
Chovau, S.
;
Dobrak, A.
;
Figoli, A.
;
Galiano, F.
;
Simone, S.
;
Drioli, E.
;
Sikdar, S. K.
;
Van der Bruggen, B.
.
CHEMICAL ENGINEERING JOURNAL,
2010, 159 (1-3)
:37-46

Chovau, S.
论文数: 0 引用数: 0
h-index: 0
机构:
Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium

Dobrak, A.
论文数: 0 引用数: 0
h-index: 0
机构:
Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium

Figoli, A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calabria, Res Inst Membrane Technol ITM CNR, I-87030 Cosenza, Italy Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium

论文数: 引用数:
h-index:
机构:

Simone, S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calabria, Res Inst Membrane Technol ITM CNR, I-87030 Cosenza, Italy Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium

Drioli, E.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calabria, Res Inst Membrane Technol ITM CNR, I-87030 Cosenza, Italy Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium

Sikdar, S. K.
论文数: 0 引用数: 0
h-index: 0
机构:
US EPA, Natl Risk Management Res Lab, Cincinnati, OH 45268 USA Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium

Van der Bruggen, B.
论文数: 0 引用数: 0
h-index: 0
机构:
Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium Katholieke Univ Leuven, Lab Appl Phys Chem & Environm Technol, Dept Chem Engn, B-3001 Louvain, Belgium