Systems Biology Analysis of Heterocellular Signaling

被引:24
作者
Tape, Christopher J. [1 ,2 ]
机构
[1] Inst Canc Res, 237 Fulham Rd, London SW3 6JB, England
[2] MIT, Dept Biol Engn, 77 Massachusetts Ave, Cambridge, MA 02139 USA
基金
英国惠康基金;
关键词
SINGLE-CELL ANALYSIS; PROTEOMIC ANALYSIS; POSTTRANSLATIONAL MODIFICATIONS; MASS-SPECTROMETRY; CANCER; TRANSDUCTION; NETWORKS; TISSUES; TUMOR; PHOSPHORYLATION;
D O I
10.1016/j.tibtech.2016.02.016
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Tissues comprise multiple heterotypic cell types (e.g., epithelial, mesenchymal, and immune cells). Communication between heterotypic cell types is essential for biological cohesion and is frequently dysregulated in disease. Despite the importance of heterocellular communication, most systems biology techniques do not report cell-specific signaling data from mixtures of cells. As a result, our existing perspective of cellular behavior under-represents the influence of heterocellular signaling. Recent technical advances now permit the resolution of systems-level cell-specific signaling data. This review discusses how new physical, spatial, and isotopic resolving methods are facilitating unique systems biology studies of heterocellular communication.
引用
收藏
页码:627 / 637
页数:11
相关论文
共 75 条
[1]   Mass spectrometry-based proteomics [J].
Aebersold, R ;
Mann, M .
NATURE, 2003, 422 (6928) :198-207
[2]   viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia [J].
Amir, El-ad David ;
Davis, Kara L. ;
Tadmor, Michelle D. ;
Simonds, Erin F. ;
Levine, Jacob H. ;
Bendall, Sean C. ;
Shenfeld, Daniel K. ;
Krishnaswamy, Smita ;
Nolan, Garry P. ;
Pe'er, Dana .
NATURE BIOTECHNOLOGY, 2013, 31 (06) :545-+
[3]   Multiplexed ion beam imaging of human breast tumors [J].
Angelo, Michael ;
Bendall, Sean C. ;
Finck, Rachel ;
Hale, Matthew B. ;
Hitzman, Chuck ;
Borowsky, Alexander D. ;
Levenson, Richard M. ;
Lowe, John B. ;
Liu, Scot D. ;
Zhao, Shuchun ;
Natkunam, Yasodha ;
Nolan, Garry P. .
NATURE MEDICINE, 2014, 20 (04) :436-+
[4]   PKA-regulated VASP phosphorylation promotes extrusion of transformed cells from the epithelium [J].
Anton, Katarzyna A. ;
Sinclair, John ;
Ohoka, Atsuko ;
Kajita, Mihoko ;
Ishikawa, Susumu ;
Benz, Peter M. ;
Renne, Thomas ;
Balda, Maria ;
Jorgensen, Claus ;
Matter, Karl ;
Fujita, Yasuyuki .
JOURNAL OF CELL SCIENCE, 2014, 127 (16) :3425-3433
[5]   Quantitative morphological signatures define local signaling networks regulating cell morphology [J].
Bakal, Chris ;
Aach, John ;
Church, George ;
Perrimon, Norbert .
SCIENCE, 2007, 316 (5832) :1753-1756
[6]   BLAME IT ON THE ANTIBODIES [J].
Baker, Monya .
NATURE, 2015, 521 (7552) :274-276
[7]   Intraoperative Tissue Identification Using Rapid Evaporative Ionization Mass Spectrometry [J].
Balog, Julia ;
Sasi-Szabo, Laszlo ;
Kinross, James ;
Lewis, Matthew R. ;
Muirhead, Laura J. ;
Veselkov, Kirill ;
Mirnezami, Reza ;
Dezso, Balazs ;
Damjanovich, Laszlo ;
Darzi, Ara ;
Nicholson, Jeremy K. ;
Takats, Zoltan .
SCIENCE TRANSLATIONAL MEDICINE, 2013, 5 (194)
[8]   Identification of Biological Tissues by Rapid Evaporative Ionization Mass Spectrometry [J].
Balog, Julia ;
Szaniszlo, Tamas ;
Schaefer, Karl-Christian ;
Denes, Julia ;
Lopata, Antal ;
Godorhazy, Lajos ;
Szalay, Daniel ;
Balogh, Lajos ;
Sasi-Szabo, Laszlo ;
Toth, Mikos ;
Takats, Zoltan .
ANALYTICAL CHEMISTRY, 2010, 82 (17) :7343-7350
[9]   Mass Cytometry: Technique for Real Time Single Cell Multitarget Immunoassay Based on Inductively Coupled Plasma Time-of-Flight Mass Spectrometry [J].
Bandura, Dmitry R. ;
Baranov, Vladimir I. ;
Ornatsky, Olga I. ;
Antonov, Alexei ;
Kinach, Robert ;
Lou, Xudong ;
Pavlov, Serguei ;
Vorobiev, Sergey ;
Dick, John E. ;
Tanner, Scott D. .
ANALYTICAL CHEMISTRY, 2009, 81 (16) :6813-6822
[10]   A Dynamical Framework for the All-or-None G1/S Transition [J].
Barr, Alexis R. ;
Heldt, Frank S. ;
Zhang, Tongli ;
Bakal, Chris ;
Novak, Bela .
CELL SYSTEMS, 2016, 2 (01) :27-37