TARGETING SERPINS IN HIGH-THROUGHPUT AND STRUCTURE-BASED DRUG DESIGN

被引:11
作者
Chang, Yi-Pin [1 ]
Mahadeva, Ravi [2 ,3 ]
Patschull, Anathe O. M. [4 ]
Nobeli, Irene [4 ]
Ekeowa, Ugo I. [5 ]
McKay, Adam R. [6 ]
Thalassinos, Konstantinos [6 ]
Irving, James A. [5 ]
Haq, Imran [5 ]
Nyon, Mun Peak [4 ]
Christodoulou, John [6 ]
Ordonez, Adriana [5 ]
Miranda, Elena [7 ]
Gooptu, Bibek [4 ]
机构
[1] Univ Oxford, Dept Chem, Chem Res Lab, Oxford, England
[2] Univ Cambridge, Addenbrookes Hosp, Div Resp Med, Sch Clin Med,Dept Med, Cambridge CB2 2QQ, England
[3] Univ Cambridge, Papworth Hosp, Div Resp Med, Sch Clin Med,Dept Med, Cambridge CB2 2QQ, England
[4] Birkbeck Coll, Dept Biol Sci, ISMB Birkbeck, London, England
[5] Univ Cambridge, Dept Med, Cambridge Inst Med Res, Cambridge CB2 2QQ, England
[6] UCL, Res Dept Struct & Mol Biol, ISMB UCL, London, England
[7] Univ Roma La Sapienza, Dipartimento Biol & Biotecnol Charles Darwin, Rome, Italy
来源
METHODS IN ENZYMOLOGY, VOL 501: SERPIN STRUCTURE AND EVOLUTION | 2011年 / 501卷
关键词
PROTEIN-LIGAND INTERACTIONS; MASS-SPECTROMETRY; REACTIVE-LOOP; ANGSTROM STRUCTURE; SCORING FUNCTION; BINDING-AFFINITY; LIVER-INJURY; DOCKING; NMR; MUTANT;
D O I
10.1016/B978-0-12-385950-1.00008-0
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Native, metastable serpins inherently tend to undergo stabilizing conformational transitions in mechanisms of health (e.g., enzyme inhibition) and disease (serpinopathies). This intrinsic tendency is modifiable by ligand binding, thus structure-based drug design is an attractive strategy in the serpinopathies. This can be viewed as a labor-intensive approach, and historically, its intellectual attractiveness has been tempered by relatively limited success in development of drugs reaching clinical practice. However, the increasing availability of a range of powerful experimental systems and higher-throughput techniques is causing academic and early-stage industrial pharmaceutical approaches to converge. In this review, we outline the different systems and techniques that are bridging the gap between what have traditionally been considered distinct disciplines. The individual methods are not serpin-specific. Indeed, many have only recently been applied to serpins, and thus investigators in other fields may have greater experience of their use to date. However, by presenting examples from our work and that of other investigators in the serpin field, we highlight how techniques with potential for automation and scaling can be combined to address a range of context-specific challenges in targeting the serpinopathies.
引用
收藏
页码:139 / 175
页数:37
相关论文
共 50 条
  • [41] Structure-based ligand design to overcome CYP inhibition in drug discovery projects
    Branden, Gisela
    Sjogren, Tove
    Schnecke, Volker
    Xue, Yafeng
    DRUG DISCOVERY TODAY, 2014, 19 (07) : 905 - 911
  • [42] High-Throughput Affinity-Based Technologies for Small-Molecule Drug Discovery
    Zhu, Zhengrong
    Cuozzo, John
    JOURNAL OF BIOMOLECULAR SCREENING, 2009, 14 (10) : 1157 - 1164
  • [43] Data processing for high-throughput mass spectrometry in drug discovery
    Liu, Chang
    Zhang, Hui
    EXPERT OPINION ON DRUG DISCOVERY, 2024, 19 (07) : 815 - 825
  • [44] High-throughput mass spectrometry for compound characterization in drug discovery
    Brönstrup, M
    MODERN MASS SPECTROMETRY, 2003, 225 : 283 - 302
  • [45] High-Throughput Qualitative and Quantitative Drug Checking by MALDI HRMS
    Joye, Timothee
    Widmer, Christele
    Morger Megevand, Roxane
    Longere, Serge
    Augsburger, Marc
    Thomas, Aurelien
    FRONTIERS IN CHEMISTRY, 2020, 8
  • [46] High-throughput screening of natural antiviral drug candidates against white spot syndrome virus targeting VP28 in Penaeus monodon: Computational drug design approaches
    Tusar, Md. Touki Tahamid
    Hossen, Zubaer
    Gazi, Hafizur Rahman
    Haq, Niamul
    Jubayer, Abdullah-Al
    Islam, Md Mahmudul
    Lisa, Asura Khanam
    Sikdar, Biswanath
    Haque, Md. Enamul
    JOURNAL OF GENETIC ENGINEERING AND BIOTECHNOLOGY, 2025, 23 (01):
  • [47] Toward high-throughput drug screening using mass spectrometry
    Maurer, HH
    Peters, FT
    THERAPEUTIC DRUG MONITORING, 2005, 27 (06) : 686 - 688
  • [48] Virtual screening in structure-based drug discovery
    Barril, X
    Hubbard, RE
    Morley, SD
    MINI-REVIEWS IN MEDICINAL CHEMISTRY, 2004, 4 (07) : 779 - 791
  • [49] Drug repositioning by structure-based virtual screening
    Ma, Dik-Lung
    Chan, Daniel Shiu-Hin
    Leung, Chung-Hang
    CHEMICAL SOCIETY REVIEWS, 2013, 42 (05) : 2130 - 2141
  • [50] In Silico Structure-Based Approach for Group Efficiency Estimation in Fragment-Based Drug Design Using Evaluation of Fragment Contributions
    Shulga, Dmitry A.
    Ivanov, Nikita N.
    Palyulin, Vladimir A.
    MOLECULES, 2022, 27 (06):