TARGETING SERPINS IN HIGH-THROUGHPUT AND STRUCTURE-BASED DRUG DESIGN

被引:11
|
作者
Chang, Yi-Pin [1 ]
Mahadeva, Ravi [2 ,3 ]
Patschull, Anathe O. M. [4 ]
Nobeli, Irene [4 ]
Ekeowa, Ugo I. [5 ]
McKay, Adam R. [6 ]
Thalassinos, Konstantinos [6 ]
Irving, James A. [5 ]
Haq, Imran [5 ]
Nyon, Mun Peak [4 ]
Christodoulou, John [6 ]
Ordonez, Adriana [5 ]
Miranda, Elena [7 ]
Gooptu, Bibek [4 ]
机构
[1] Univ Oxford, Dept Chem, Chem Res Lab, Oxford, England
[2] Univ Cambridge, Addenbrookes Hosp, Div Resp Med, Sch Clin Med,Dept Med, Cambridge CB2 2QQ, England
[3] Univ Cambridge, Papworth Hosp, Div Resp Med, Sch Clin Med,Dept Med, Cambridge CB2 2QQ, England
[4] Birkbeck Coll, Dept Biol Sci, ISMB Birkbeck, London, England
[5] Univ Cambridge, Dept Med, Cambridge Inst Med Res, Cambridge CB2 2QQ, England
[6] UCL, Res Dept Struct & Mol Biol, ISMB UCL, London, England
[7] Univ Roma La Sapienza, Dipartimento Biol & Biotecnol Charles Darwin, Rome, Italy
关键词
PROTEIN-LIGAND INTERACTIONS; MASS-SPECTROMETRY; REACTIVE-LOOP; ANGSTROM STRUCTURE; SCORING FUNCTION; BINDING-AFFINITY; LIVER-INJURY; DOCKING; NMR; MUTANT;
D O I
10.1016/B978-0-12-385950-1.00008-0
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Native, metastable serpins inherently tend to undergo stabilizing conformational transitions in mechanisms of health (e.g., enzyme inhibition) and disease (serpinopathies). This intrinsic tendency is modifiable by ligand binding, thus structure-based drug design is an attractive strategy in the serpinopathies. This can be viewed as a labor-intensive approach, and historically, its intellectual attractiveness has been tempered by relatively limited success in development of drugs reaching clinical practice. However, the increasing availability of a range of powerful experimental systems and higher-throughput techniques is causing academic and early-stage industrial pharmaceutical approaches to converge. In this review, we outline the different systems and techniques that are bridging the gap between what have traditionally been considered distinct disciplines. The individual methods are not serpin-specific. Indeed, many have only recently been applied to serpins, and thus investigators in other fields may have greater experience of their use to date. However, by presenting examples from our work and that of other investigators in the serpin field, we highlight how techniques with potential for automation and scaling can be combined to address a range of context-specific challenges in targeting the serpinopathies.
引用
收藏
页码:139 / 175
页数:37
相关论文
共 50 条
  • [21] Structure-based drug design
    Amzel, LM
    CURRENT OPINION IN BIOTECHNOLOGY, 1998, 9 (04) : 366 - 369
  • [22] High-Throughput Chemical Screening and Structure-Based Models to Predict hERG Inhibition
    Krishna, Shagun
    Borrel, Alexandre
    Huang, Ruili
    Zhao, Jinghua
    Xia, Menghang
    Kleinstreuer, Nicole
    BIOLOGY-BASEL, 2022, 11 (02):
  • [23] High-throughput screening and structure-based approaches to hit discovery: is there a clear winner?
    Jhoti, Harren
    Rees, Stephen
    Solari, Roberto
    EXPERT OPINION ON DRUG DISCOVERY, 2013, 8 (12) : 1449 - 1453
  • [24] Protein engineering enables a soakable crystal form of human CDK7 primed for high-throughput crystallography and structure-based drug design
    Mukherjee, Manjeet
    Day, Philip J.
    Laverty, Duncan
    Bueren-Calabuig, Juan A.
    Woodhead, Andrew J.
    Griffiths-Jones, Charlotte
    Hiscock, Steve
    East, Charlotte
    Boyd, Susan
    O'Reilly, Marc
    STRUCTURE, 2024, 32 (08)
  • [25] High-throughput structure-based pharmacophore modelling as a basis for successful parallel virtual screening
    Steindl, Theodora M.
    Schuster, Daniela
    Wolber, Gerhard
    Laggner, Christian
    Langer, Thierry
    JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2006, 20 (12) : 703 - 715
  • [26] High-throughput structure-based pharmacophore modelling as a basis for successful parallel virtual screening
    Theodora M. Steindl
    Daniela Schuster
    Gerhard Wolber
    Christian Laggner
    Thierry Langer
    Journal of Computer-Aided Molecular Design, 2006, 20 : 703 - 715
  • [27] High-throughput screening of chemicals as functional substitutes using structure-based classification models
    Phillips, Katherine A.
    Wambaugh, John F.
    Grulke, Christopher M.
    Dionisio, Kathie L.
    Isaacs, Kristin K.
    GREEN CHEMISTRY, 2017, 19 (04) : 1063 - 1074
  • [28] Targeting Drug Resistance in EGFR with Covalent Inhibitors: A Structure-Based Design Approach
    Engel, Julian
    Richters, Andre
    Getlik, Matthaeus
    Tomassi, Stefano
    Keul, Marina
    Termathe, Martin
    Lategahn, Jonas
    Becker, Christian
    Mayer-Wrangowski, Svenja
    Gruetter, Christian
    Uhlenbrock, Niklas
    Kruell, Jasmin
    Schaumann, Niklas
    Eppmann, Simone
    Kibies, Patrick
    Hoffgaard, Franziska
    Heil, Jochen
    Menninger, Sascha
    Ortiz-Cuaran, Sandra
    Heuckmann, Johannes M.
    Tinnefeld, Verena
    Zahedi, Rene P.
    Sos, Martin L.
    Schultz-Fademrecht, Carsten
    Thomas, Roman K.
    Kast, Stefan M.
    Rauh, Daniel
    JOURNAL OF MEDICINAL CHEMISTRY, 2015, 58 (17) : 6844 - 6863
  • [29] Targeting protein multiple conformations: A structure-based strategy for kinase drug design
    Liao, Jeffrey Jie-Lou
    Andrews, Robert C.
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2007, 7 (14) : 1394 - 1407
  • [30] Targeting the RdRp of Emerging RNA Viruses: The Structure-Based Drug Design Challenge
    Picarazzi, Francesca
    Vicenti, Ilaria
    Saladini, Francesco
    Zazzi, Maurizio
    Mori, Mattia
    MOLECULES, 2020, 25 (23):