Comprehensive Analysis of Centromere Protein Family Member Genes in Lung Adenocarcinoma

被引:0
作者
Yang, Pan [1 ]
Pei, Xiong [2 ]
Deng, Jiahui [2 ]
Li, Xiaoping [1 ]
机构
[1] Tianjin First Cent Hosp, Dept Thorac Surg, Tianjin 300192, Peoples R China
[2] Lanzhou Univ, Clin Med Coll 2, Lanzhou 730000, Peoples R China
来源
CRITICAL REVIEWS IN EUKARYOTIC GENE EXPRESSION | 2022年 / 32卷 / 04期
关键词
lung adenocarcinoma; risk model; bioinformatics; centromere protein family member genes; DNA METHYLATION; CENP-F; POOR-PROGNOSIS; CANCER; EXPRESSION; PROGRESSION; OVEREXPRESSION; MORTALITY;
D O I
暂无
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Centromere protein family member genes (CENPx genes) have been reported to be exceptionally expressed in various cancers. However, the systematic analysis of their roles in lung adenocarcinoma (LUAD) is still lacking. The aim of this study is to comprehensively analyze the expression and survival value of CENPx genes in LUAD and to perform immune analysis and related mechanistic investigations. We confirmed that CENPA, CENPF, CENPI, CENPK, CENPM, CENPN, CENPU and CENPW were highly expressed in LUAD, and their high expression were associated with poor prognosis (P < 0.05). Methylation results showed that methylation of one CpG site on promotor of CENPF, one of CENPU and two CENPMs were relevant to overall survival in LUAD. The gene alteration analysis demonstrated that the altered group of CENPF were correlated with poor overall survival. Microsatellite instability analysis concluded that the expression of CENPF and microsatellite instability scores were correlated positively with statistical significance. In addition, the expression changes of these eight genes were significantly associated with immune cell infiltration and the expression of immunoinhibitors, immunostimulators, and major histocompatibility complex (MHC) molecules. Functional enrichment analysis indicated that directly related genes were mainly involved in MRNA splicing, via spliceosome, Poly(A) RNA binding and Spliceosome. Moreover, we established a risk model based on LASSO regression. The expression changes of these eight genes in the Gene Expression Omnibus were also highly expressed in LUAD -compared with normal tissues, which confirmed the analysis in the Gene Expression Profiling Interactive Analysis (GEPIA) database. To sum up, we aimed to provide new biomarkers.
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页码:57 / 72
页数:16
相关论文
共 59 条
  • [1] Trends and advances in tumor immunology and lung cancer immunotherapy
    Aldarouish, Mohanad
    Wang, Cailian
    [J]. JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH, 2016, 35 : 1 - 13
  • [2] [Anonymous], 2021, OPENBIOX COMMUNITY
  • [3] Farnesyl transferase inhibitors block the farnesylation of CENP-E and CENP-F and alter the association of CENP-E with the microtubules
    Ashar, HR
    James, L
    Gray, K
    Carr, D
    Black, S
    Armstrong, L
    Bishop, WR
    Kirschmeier, P
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (39) : 30451 - 30457
  • [4] High-throughput RNAi screening reveals cancer-selective lethal targets in the RNA spliceosome
    Blijlevens, Maxime
    van der Meulen-Muileman, Ida H.
    de Menezes, Renee X.
    Smit, Egbert F.
    van Beusechem, Victor W.
    [J]. ONCOGENE, 2019, 38 (21) : 4142 - 4153
  • [5] UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses
    Chandrashekar, Darshan S.
    Bashel, Bhuwan
    Balasubramanya, Sai Akshaya Hodigere
    Creighton, Chad J.
    Ponce-Rodriguez, Israel
    Chakravarthi, Balabhadrapatruni V. S. K.
    Varambally, Sooryanarayana
    [J]. NEOPLASIA, 2017, 19 (08): : 649 - 658
  • [6] Trends in mortality from major cancers in the Americas: 1980-2010
    Chatenoud, L.
    Bertuccio, P.
    Bosetti, C.
    Malvezzi, M.
    Levi, F.
    Negri, E.
    La Vecchia, C.
    [J]. ANNALS OF ONCOLOGY, 2014, 25 (09) : 1843 - 1853
  • [7] Leaving no-one behind: how CENP-E facilitates chromosome alignment
    Craske, Benjamin
    Welburn, Julie P. I.
    [J]. KINETOCHORES AND CHROMOSOME SEGREGATION, 2020, 64 (02): : 313 - 324
  • [8] Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged
    David, Charles J.
    Manley, James L.
    [J]. GENES & DEVELOPMENT, 2010, 24 (21) : 2343 - 2364
  • [9] Premature Mortality Due to PM2.5 Over India: Effect of Atmospheric Transport and Anthropogenic Emissions
    David, Liji M.
    Ravishankara, A. R.
    Kodros, John K.
    Pierce, Jeffrey R.
    Venkataraman, Chandra
    Sadavarte, Pankaj
    [J]. GEOHEALTH, 2019, 3 (01): : 2 - 10
  • [10] de la Guardia C, 2001, HEAD NECK-J SCI SPEC, V23, P104