Whole genome sequences reveal Vibrio hemicentroti Kim et al. 2013 as a later heterotypic synonym of Vibrio splendidus (Beijerinck 1900) Baumann et al. 1981

被引：3

作者：

Lucena, Teresa ^{[1
,2
]}

Macian, M. Carmen ^{[1
,2
]}

Arahal, David R. ^{[1
,2
]}

Rodrigo-Torres, Lidia ^{[1
,2
]}

Pujalte, Maria J. ^{[1
,2
]}

机构：

[1] Univ Valencia, Dept Microbiol & Ecol, Valencia, Spain

[2] Univ Valencia, CECT, Valencia, Spain

来源：

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 2017年 / 67卷 / 06期

关键词：

Vibrio hemicentroti; Vibrio splendidus; synonymy; ANI; splendidus clade; BACTERIUM; STANDARD; CLADE;

D O I：

10.1099/ijsem.0.001842

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The synonymy between Vibrio hemicentroti Kim et al. 2013 and Vibrio splendidus (Beijerinck 1900) Baumann et al. 1981 was suggested after a recent multilocus sequence analysis of the Splendidus clade, which included the type strains of both species. To clarify their status, we have determined genomic indexes from whole genome sequences of strains V. hemicentroti CECT 8714(T) and V. splendidus NCCB 53037(T). Average Nucleotide Identities of 96.0-96.7% and an in silico DNA-DNA hybridization value of 70.2 %, as well as similarity levels of selected housekeeping gene sequences support the consideration of V. hemicentroti as a later heterotypic synonym of V. splendidus.

引用

页码：1669 / 1671

页数：3

共 17 条

[1] Draft genomic sequence of Nereida ignava CECT 5292T, a marine bacterium of the family Rhodobacteraceae [J].

Arahal, David R. ;

Pujalte, Maria J. ;

Rodrigo-Torres, Lidia .

STANDARDS IN GENOMIC SCIENCES, 2016, 11

[2] Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs [J].

Auch, Alexander F. ;

Klenk, Hans-Peter ;

Goeker, Markus .

STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01) :142-148

[3]

Baumann P., 1984, Bergey's manual of systematic bacteriology. Vol, V1, P518

[4]

Baumann P, 1981, INT J SYST BACTERIOL, V31, P215

[5]

Beijerinck M.W., 1900, Proceedings of the Academy of Sciences, V3, P352

[6] DNA-DNA hybridization values and their relationship to whole-genome sequence similarities [J].

Goris, Johan ;

Konstantinidis, Konstantinos T. ;

Klappenbach, Joel A. ;

Coenye, Tom ;

Vandamme, Peter ;

Tiedje, James M. .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :81-91

[7] Vibrio hemicentroti sp nov., an alginate lyase-producing bacterium, isolated from the gut microflora of sea urchin (Hemicentrotus pulcherrimus) [J].

Kim, Duwoon ;

Baik, Keun Sik ;

Hwang, Ye Seul ;

Choi, Jong-Soon ;

Kwon, Joseph ;

Seong, Chi Nam .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :3697-3703

[8] OrthoANI: An improved algorithm and software for calculating average nucleotide identity [J].

Lee, Imchang ;

Kim, Yeong Ouk ;

Park, Sang-Cheol ;

Chun, Jongsik .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :1100-1103

[9] Genome sequence-based species delimitation with confidence intervals and improved distance functions [J].

Meier-Kolthoff, Jan P. ;

Auch, Alexander F. ;

Klenk, Hans-Peter ;

Goeker, Markus .

BMC BIOINFORMATICS, 2013, 14

[10] A European epidemiological survey of Vibrio splendidus clade shows unexplored diversity and massive exchange of virulence factors [J].

Nasfi, H. ;

Travers, M. A. ;

de Lorgeril, J. ;

Habib, C. ;

Sannie, T. ;

Sorieul, L. ;

Gerard, J. ;

Avarre, J. C. ;

Haffner, P. ;

Tourbiez, D. ;

Renault, T. ;

Furones, D. ;

Roque, A. ;

Pruzzo, C. ;

Cheslett, D. ;

Gdoura, R. ;

Vallaeys, T. .

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 2015, 31 (03) :461-475

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