Ensembl 2005

被引：359

作者：

Hubbard, T

Andrews, D

Caccamo, M

Cameron, G

Chen, Y

Clamp, M

Clarke, L

Coates, G

Cox, T

Cunningham, F

Curwen, V

Cutts, T

Down, T

Durbin, R

Fernandez-Suarez, XM

Gilbert, J

Hammond, M

Herrero, J

Hotz, H

Howe, K

Iyer, V

Jekosch, K

Kahari, A

Kasprzyk, A

Keefe, D

Keenan, S

Kokocinsci, F

London, D

Longden, I

McVicker, G

Melsopp, C

Meidl, P

Potter, S

Proctor, G

Rae, M

Rios, D

Schuster, M

Searle, S

Severin, J

Slater, G

Smedley, D

Smith, J

Spooner, W

Stabenau, A

Stalker, J

Storey, R

Trevanion, S

Ureta-Vidal, A

Vogel, J

White, S

机构：

[1] EMBL, European Bioinformat Inst, Hinxton CB10 1SA, Cambs, England

[2] Wellcome Trust Res Labs, Sanger Inst, Hinxton CB10 1SA, Cambs, England

来源：

NUCLEIC ACIDS RESEARCH | 2005年 / 33卷

基金：

英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/nar/gki138

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Ensembl (http://www.ensembi.org/) project provides a comprehensive and integrated source of annotation of large genome sequences. Over the last year the number of genomes available from the Ensembl site has increased by 7 to 16, with the addition of the six vertebrate genomes of chimpanzee,dog, cow, chicken, tetraodon and frog and the insect genome of honeybee. The majority have been annotated automatically using the Ensembl gene build system, showing its flexibility to reliably annotate a wide variety of genomes. With the increased number of vertebrate genomes, the comparative analysis provided to users has been greatly improved, with new website interfaces allowing annotation of different genomes to be directly compared. The Ensembl software system is being increasingly widely reused in different projects showing the benefits of a completely open approach to software development and distribution.

引用

页码：D447 / D453

页数：7

共 29 条

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Gilbert, JGR ;

Jekosch, K ;

Keenan, S ;

Meidl, P ;

Searle, SM ;

Stalker, J ;

Storey, R ;

Trevanion, S ;

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Chen, Y ;

Clarke, L ;

Coates, G ;

Cuff, J ;

Curwen, V ;

Cutts, T ;

Down, T ;

Eyras, E ;

Fernandez-Suarez, XM ;

Gane, P ;

Gibbins, B ;

Gilbert, J ;

Hammond, M ;

Hotz, HR ;

Iyer, V ;

Jekosch, K ;

Kahari, A ;

Kasprzyk, A ;

Keefe, D ;

Keenan, S ;

Lehvaslaiho, H ;

McVicker, G ;

Melsopp, C ;

Meidl, P ;

Mongin, E ;

Pettett, R ;

Potter, S ;

Proctor, G ;

Rae, M ;

Searle, S ;

Slater, G ;

Smedley, D ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Storey, R ;

Ureta-Vidal, A ;

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Durbin, R ;

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Birney, E ;

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Caccamo, M ;

Cameron, G ;

Chen, Y ;

Clarke, L ;

Coates, G ;

Cox, T ;

Cuff, J ;

Curwen, V ;

Cutts, T ;

Down, T ;

Durbin, R ;

Eyras, E ;

Fernandez-Suarez, XM ;

Gane, P ;

Gibbins, B ;

Gilbert, J ;

Hammond, M ;

Hotz, H ;

Iyer, V ;

Kahari, A ;

Jekosch, K ;

Kasprzyk, A ;

Keefe, D ;

Keenan, S ;

Lehvaslaiho, H ;

McVicker, G ;

Melsopp, C ;

Meidl, P ;

Mongin, E ;

Pettett, R ;

Potter, S ;

Proctor, G ;

Rae, M ;

Searle, S ;

Slater, G ;

Smedley, D ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Storey, R ;

Ureta-Vidal, A ;

Woodwark, C ;

Clamp, M ;

Hubbard, T .

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GENOME RESEARCH, 2004, 14 (05) :971-975

[8] The Ensembl automatic gene annotation system [J].

Curwen, V ;

Eyras, E ;

Andrews, TD ;

Clarke, L ;

Mongin, E ;

Searle, SMJ ;

Clamp, M .

GENOME RESEARCH, 2004, 14 (05) :942-950

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Eyras, E ;

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GENOME RESEARCH, 2004, 14 (05) :976-987

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