Genomewide association studies in allergy and the influence of ethnicity

被引:21
作者
Barnes, Kathleen C. [1 ]
机构
[1] Johns Hopkins Asthma & Allergy Ctr, Baltimore, MD 21224 USA
关键词
admixture; ethnicity; genomewide association studies; population stratification; ASTHMA SUSCEPTIBILITY GENE; WIDE SEARCH; POPULATION-STRUCTURE; PUERTO-RICAN; POSITIONAL CLONING; ORMDL3; EXPRESSION; GENOMIC CONTROL; VARIANTS; LOCUS; AMERICAN;
D O I
10.1097/ACI.0b013e32833de6ee
中图分类号
R392 [医学免疫学];
学科分类号
100102 ;
摘要
Purpose of review Asthma and allergic diseases are common and disproportionately affect racial and ethnic minorities. Large-scale research efforts and the expense committed to multiple genomewide association studies (GWAS) have led to the identification of numerous susceptibility loci for the allergic diseases, but few successes have been reported in populations that are not of European ancestry. Recent findings Of the more than two dozen GWAS for asthma and allergic disease performed to date, very few have included racial/ethnic minorities. Lessons learned from the studies conducted so far suggest that the GWAS approach must include considerations unique to the ancestral populations represented in the sample, population stratification due to admixture, and recognition that the current coverage of common variants both in the public database and on commercially available single-nucleotide polymorphism chips is inadequate to detect true genetic associations among ethnic/racial groups. Summary Advancements in the GWAS technology for identifying genes relevant to asthma and allergic disease among under-represented ethnic and racial minorities who suffer most will facilitate the identification and confirmation of validated genetic risk factors that are both unique to minority groups as well as confirm risk factors that are generic to the population at large.
引用
收藏
页码:427 / 433
页数:7
相关论文
共 67 条
[21]   Assessing the impact of population stratification on genetic association studies [J].
Freedman, ML ;
Reich, D ;
Penney, KL ;
McDonald, GJ ;
Mignault, AA ;
Patterson, N ;
Gabriel, SB ;
Topol, EJ ;
Smoller, JW ;
Pato, CN ;
Pato, MT ;
Petryshen, TYL ;
Kolonel, LN ;
Lander, ES ;
Sklar, P ;
Henderson, B ;
Hirschhorn, JN ;
Altshuler, D .
NATURE GENETICS, 2004, 36 (04) :388-393
[22]   ORMDL3 gene is associated with asthma in three ethnically diverse populations [J].
Galanter, Joshua ;
Choudhry, Shweta ;
Eng, Celeste ;
Nazario, Sylvette ;
Rodriguez-Santana, Jose R. ;
Casal, Jesus ;
Torres-Palacios, Alfonso ;
Salas, Jorge ;
Chapela, Rocio ;
Watson, H. Geoffrey ;
Meade, Kelley ;
LeNoir, Michael ;
Rodriguez-Cintron, William ;
Avila, Pedro C. ;
Burchard, Esteban Gonzalez .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2008, 177 (11) :1194-1200
[23]  
*GINA GIFA, 2008, GLOB STRAT ASTHM MAN
[24]   Common Genetic Variation and Human Traits [J].
Goldstein, David B. .
NEW ENGLAND JOURNAL OF MEDICINE, 2009, 360 (17) :1696-1698
[25]  
HAKONARSON H, 2002, AM J HUM GENET, V71
[26]   Genome-Wide Association Study Implicates Chromosome 9q21.31 as a Susceptibility Locus for Asthma in Mexican Children [J].
Hancock, Dana B. ;
Romieu, Isabelle ;
Shi, Min ;
Sienra-Monge, Juan-Jose ;
Wu, Hao ;
Chiu, Grace Y. ;
Li, Huiling ;
Estela del Rio-Navarro, Blanca ;
Willis-Owens, Saffron A. G. ;
Weiss, Scott T. ;
Raby, Benjamin A. ;
Gao, Hong ;
Eng, Celeste ;
Chapeia, Rocio ;
Burchard, Esteban G. ;
Tang, Hua ;
Sullivan, Patrick F. ;
London, Stephanie J. .
PLOS GENETICS, 2009, 5 (08)
[27]  
Hindorff L., CATALOG PUBLISHED GE
[28]   Genetic polymorphism regulating ORM1-like 3 (Saccharomyces cerevisiae) expression is associated with childhood atopic asthma in a Japanese population [J].
Hirota, Tomomitsu ;
Harada, Michishige ;
Sakashita, Masafumi ;
Doi, Satoru ;
Miyatake, Akihiko ;
Fujita, Kimie ;
Enomoto, Tadao ;
Ebisawa, Motohiro ;
Yoshihara, Shigemi ;
Noguchi, Emiko ;
Saito, Hirohisa ;
Nakamura, Yusuke ;
Tamari, Mayumi .
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2008, 121 (03) :769-770
[29]   Control of confounding of genetic associations in stratified populations [J].
Hoggart, CJ ;
Parra, EJ ;
Shriver, MD ;
Bonilla, C ;
Kittles, RA ;
Clayton, DG ;
McKeigue, PM .
AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 72 (06) :1492-1504
[30]   Asthma mortality in US Hispanics of Mexican, Puerto Rican, and Cuban Heritage, 1990-1995 [J].
Homa, DM ;
Mannino, DM ;
Lara, M .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2000, 161 (02) :504-509