A novel chimera:: The "truncated hemoglobin-antibiotic monooxygenase" from Streptomyces avermitilis

被引:12
作者
Bonamore, Alessandra
Attill, Andrea
Arenghi, Fabio
Catacchio, Bruno
Chiancone, Emilia
Morea, Veronica
Boffi, Alberto
机构
[1] Univ Roma La Sapienza, Dept Biochem Sci, I-00185 Rome, Italy
[2] Ist Nazl Fis Nucl, I-10125 Turin, Italy
[3] CPC Biotech Srl, I-80121 Naples, Italy
[4] Univ Roma La Sapienza, Inst Mol Biol & Pathol, CNR, I-00185 Rome, Italy
关键词
bacterial hemoglobin; antibiotic biosynthesis monooxygenase; heme peroxidase; quinol oxidase;
D O I
10.1016/j.gene.2007.01.038
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Novel chimeric proteins made of a globin domain fused with a "cofactor free" monooxygenase domain have been identified within the Streptomyces avermitilis and Frankia sp. genomes by means of bioinformatics methods. Structure based sequence alignments show that the globin domains of both proteins can be unambiguously assigned to the truncated hemoglobin family, in view of the, striking similarity to the truncated hemoglobins from Mycobacterium tuberculosis, Thermobifida fusca and Bacillus subtilis. In turn, the non-heme domains belong to a family of small (about 100 aminoacids) homodimeric proteins annotated as antibiotic biosynthesis monooxygenases, despite the lack of a cofactor (e.g., a metal, a flavin or a heme) necessary for oxygen activation. The chimeric protein from S. avermitilis has been cloned, expressed and characterized. The protein is a stable dimer in solution based on analytical ultracentrifugation experiments. The heme ligand binding properties with oxygen and carbonmonoxide resemble those of other Group If truncated hemoglobins. In addition, an oxygen dependent redox activity has been demonstrated towards easily oxidizable substrates such as menadiol and p-aminophenol. These findings suggest novel functional roles of truncated hemoglobins, which might represent a vast class of multipurpose oxygen activating/scavenging proteins whose catalytic action is mediated by the interaction with cofactor free monooxygenases. (c) 2007 Elsevier B.V. All rights reserved.
引用
收藏
页码:52 / 61
页数:10
相关论文
共 35 条
[11]   The truncated oxygen-avid hemoglobin from Bacillus subtilis -: X-ray structure and ligand binding properties [J].
Giangiacomo, L ;
Ilari, A ;
Boffi, A ;
Morea, V ;
Chiancone, E .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (10) :9192-9202
[12]   Crystal structure and ligand binding properties of the truncated hemoglobin from Geobacillus stearothermophilus [J].
Ilari, Andrea ;
Kjelgaard, Peter ;
von Wachenfeldt, Claes ;
Catacchio, Bruno ;
Chiancone, Emilia ;
Boffi, Alberto .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2007, 457 (01) :85-94
[13]   Identification of a monooxygenase from Streptomyces coelicolor A3(2) involved in biosynthesis of actinorhodin: Purification and characterization of the recombinant enzyme [J].
Kendrew, SG ;
Hopwood, DA ;
Marsh, ENG .
JOURNAL OF BACTERIOLOGY, 1997, 179 (13) :4305-4310
[14]   The RCSB PDB information portal for structural genomics [J].
Kouranov, Andrei ;
Xie, Lei ;
de la Cruz, Joanna ;
Chen, Li ;
Westbrook, John ;
Bourne, Philip E. ;
Berman, Helen M. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D302-D305
[15]   Direct measurement of equilibrium constants for high-affinity hemoglobins [J].
Kundu, S ;
Premer, SA ;
Hoy, JA ;
Trent, JT ;
Hargrove, MS .
BIOPHYSICAL JOURNAL, 2003, 84 (06) :3931-3940
[16]  
Laue T. M., 1992, Analytical Ultracentrifugation in Biochemistry and Polymer Science, DOI [10.1016/0169-2607(96)01719-1, DOI 10.1016/0169-2607(96)01719-1]
[17]  
Lemieux M. Joanne, 2005, Journal of Structural and Functional Genomics, V6, P245, DOI 10.1007/s10969-005-9004-6
[18]   SMART 5: domains in the context of genomes and networks [J].
Letunic, Ivica ;
Copley, Richard R. ;
Pils, Birgit ;
Pinkert, Stefan ;
Schultz, Joerg ;
Bork, Peer .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D257-D260
[19]   CDD: a conserved domain database for protein classification [J].
Marchler-Bauer, A ;
Anderson, JB ;
Cherukuri, PF ;
DeWweese-Scott, C ;
Geer, LY ;
Gwadz, M ;
He, SQ ;
Hurwitz, DI ;
Jackson, JD ;
Ke, ZX ;
Lanczycki, CJ ;
Liebert, CA ;
Liu, CL ;
Lu, F ;
Marchler, GH ;
Mullokandov, M ;
Shoemaker, BA ;
Simonyan, V ;
Song, JS ;
Thiessen, PA ;
Yamashita, RA ;
Yin, JJ ;
Zhang, DC ;
Bryant, SH .
NUCLEIC ACIDS RESEARCH, 2005, 33 :D192-D196
[20]   Detecting protein function and protein-protein interactions from genome sequences [J].
Marcotte, EM ;
Pellegrini, M ;
Ng, HL ;
Rice, DW ;
Yeates, TO ;
Eisenberg, D .
SCIENCE, 1999, 285 (5428) :751-753