Local rates of recombination are positively correlated with GC content in the human genome

被引:226
作者
Fullerton, SM
Carvalho, AB
Clark, AG
机构
[1] Penn State Univ, Dept Biol, Inst Mol Evolut Genet, University Pk, PA 16802 USA
[2] Univ Fed Rio de Janeiro, Dept Genet, Rio De Janeiro, Brazil
关键词
recombination; GC content; isochores; Hill-Robertson effect; mutation;
D O I
10.1093/oxfordjournals.molbev.a003886
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:1139 / 1142
页数:4
相关论文
共 50 条
[41]   Features of the GC content in genes of the second and fourth chromosomes of nuclear genome of Arabidopsis thaliana [J].
Atambaeva, SA ;
Ivashchenko, AT .
BIOTECHNOLOGY AND INDUSTRY, 2004, :89-95
[42]   False gene and chromosome losses in genome assemblies caused by GC content variation and repeats [J].
Juwan Kim ;
Chul Lee ;
Byung June Ko ;
Dong Ahn Yoo ;
Sohyoung Won ;
Adam M. Phillippy ;
Olivier Fedrigo ;
Guojie Zhang ;
Kerstin Howe ;
Jonathan Wood ;
Richard Durbin ;
Giulio Formenti ;
Samara Brown ;
Lindsey Cantin ;
Claudio V. Mello ;
Seoae Cho ;
Arang Rhie ;
Heebal Kim ;
Erich D. Jarvis .
Genome Biology, 23
[43]   False gene and chromosome losses in genome assemblies caused by GC content variation and repeats [J].
Kim, Juwan ;
Lee, Chul ;
Ko, Byung June ;
Yoo, Dong Ahn ;
Won, Sohyoung ;
Phillippy, Adam M. ;
Fedrigo, Olivier ;
Zhang, Guojie ;
Howe, Kerstin ;
Wood, Jonathan ;
Durbin, Richard ;
Formenti, Giulio ;
Brown, Samara ;
Cantin, Lindsey ;
Mello, Claudio V. ;
Cho, Seoae ;
Rhie, Arang ;
Kim, Heebal ;
Jarvis, Erich D. .
GENOME BIOLOGY, 2022, 23 (01)
[44]   Heterogeneity in regional GC content and differential usage of codons and amino acids in GC-poor and GC-rich regions of the genome of Apis mellifera [J].
Jorgensen, Frank Gronlund ;
Schierup, Mikkel Heide ;
Clark, Andrew G. .
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (02) :611-619
[45]   Minimal repeats are ubiquitous sites of crossover and recombination across the human genome [J].
Mina Ohadi ;
Nahid Tajeddin ;
Hadi Bayat ;
Dale J Annear ;
Ali M. A. Maddi ;
Hamid R. Khorram Khorshid ;
Kaveh Kavousi ;
Ahmad Delbari ;
Alireza Nikkhah ;
Masoud Arabfard .
BMC Genomics, 26 (1)
[46]   The GC-content at the 5′ ends of human protein-coding genes is undergoing mutational decay [J].
Qiu, Yi ;
Kang, Yoon Mo ;
Korfmann, Christopher ;
Pouyet, Fanny ;
Eckford, Andrew ;
Palazzo, Alexander F. .
GENOME BIOLOGY, 2024, 25 (01)
[47]   High GC content of simple sequence repeats in Herpes simplex virus type 1 genome [J].
Ouyang, Qingjian ;
Zhao, Xiangyan ;
Feng, Haiping ;
Tian, You ;
Li, Dan ;
Li, Mingfu ;
Tan, Zhongyang .
GENE, 2012, 499 (01) :37-40
[48]   Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content [J].
Li, Fay-Wei ;
Kuo, Li-Yaung ;
Pryer, Kathleen M. ;
Rothfels, Carl J. .
GENOME BIOLOGY AND EVOLUTION, 2016, 8 (08) :2452-2458
[49]   Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome [J].
Joseph, Biju ;
Schwarz, Roland F. ;
Linke, Burkhard ;
Blom, Jochen ;
Becker, Anke ;
Claus, Heike ;
Goesmann, Alexander ;
Frosch, Matthias ;
Mueller, Tobias ;
Vogel, Ulrich ;
Schoen, Christoph .
PLOS ONE, 2011, 6 (04)
[50]   The Genome of the Human Pathogen Candida albicans Is Shaped by Mutation and Cryptic Sexual Recombination [J].
Wang, Joshua M. ;
Bennett, Richard J. ;
Anderson, Matthew Z. .
MBIO, 2018, 9 (05)