Cheaper faster drug development validated by the repositioning of drugs against neglected tropical diseases

被引:96
作者
Williams, Kevin [1 ]
Bilsland, Elizabeth [2 ,3 ,4 ]
Sparkes, Andrew [1 ]
Aubrey, Wayne [1 ]
Young, Michael [5 ]
Soldatova, Larisa N. [6 ]
De Grave, Kurt [7 ]
Ramon, Jan [7 ]
de Clare, Michaela [2 ,3 ]
Sirawaraporn, Worachart [8 ]
Oliver, Stephen G. [2 ,3 ]
King, Ross D. [9 ,10 ]
机构
[1] Aberystwyth Univ, Dept Comp Sci, Aberystwyth SY23 3DB, Dyfed, Wales
[2] Univ Cambridge, Cambridge Syst Biol Ctr, Cambridge CB2 1GA, England
[3] Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England
[4] Univ Estadual Campinas, Dept Struct & Funct Biol, BR-13083865 Sao Paulo, Brazil
[5] Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3DD, Dyfed, Wales
[6] Brunel Univ, Dept Comp Sci, London UB8 3PH, England
[7] Katholieke Univ Leuven, Dept Comp Sci, B-3001 Heverlee, Belgium
[8] Mahidol Univ, Dept Biochem, Bangkok 10700, Thailand
[9] Univ Manchester, Manchester Inst Biotechnol, Manchester M1 7DN, Lancs, England
[10] Univ Manchester, Sch Comp Sci, Manchester M1 7DN, Lancs, England
基金
英国工程与自然科学研究理事会; 英国生物技术与生命科学研究理事会;
关键词
drug design; artificial intelligence; quantitative structure activity relationship; DIHYDROFOLATE-REDUCTASE; FUMAGILLIN; RESISTANCE; MALARIA;
D O I
10.1098/rsif.2014.1289
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
There is an urgent need to make drug discovery cheaper and faster. This will enable the development of treatments for diseases currently neglected for economic reasons, such as tropical and orphan diseases, and generally increase the supply of new drugs. Here, we report the Robot Scientist 'Eve' designed to make drug discovery more economical. A Robot Scientist is a laboratory automation system that uses artificial intelligence (AI) techniques to discover scientific knowledge through cycles of experimentation. Eve integrates and automates library-screening, hit-confirmation, and lead generation through cycles of quantitative structure activity relationship learning and testing. Using econometric modelling we demonstrate that the use of AI to select compounds economically outperforms standard drug screening. For further efficiency Eve uses a standardized form of assay to compute Boolean functions of compound properties. These assays can be quickly and cheaply engineered using synthetic biology, enabling more targets to be assayed for a given budget. Eve has repositioned several drugs against specific targets in parasites that cause tropical diseases. One validated discovery is that the anti-cancer compound TNP-470 is a potent inhibitor of dihydrofolate reductase from the malaria-causing parasite Plasmodium vivax.
引用
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页数:9
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