A new model for the estimation of cell proliferation dynamics using CFSE data

被引:31
作者
Banks, H. T. [1 ,2 ]
Sutton, Karyn L. [1 ,2 ]
Thompson, W. Clayton [1 ,2 ]
Bocharov, Gennady [3 ]
Doumic, Marie [4 ]
Schenkel, Tim [5 ]
Argilaguet, Jordi [6 ]
Giest, Sandra [6 ]
Peligero, Cristina [6 ]
Meyerhans, Andreas [5 ,6 ]
机构
[1] N Carolina State Univ, Ctr Res Sci Computat, Raleigh, NC 27695 USA
[2] N Carolina State Univ, Ctr Quantitat Sci Biomed, Raleigh, NC 27695 USA
[3] RAS, Inst Numer Math, Moscow 117901, Russia
[4] Projet BANG, INRIA Rocquencourt, F-78153 Rocquencourt, France
[5] Univ Saarland, Dept Virol, D-66421 Homburg, Germany
[6] Univ Pompeu Fabra, Dept Expt & Hlth Sci, ICREA Infect Biol Lab, Barcelona 08003, Spain
基金
俄罗斯基础研究基金会;
关键词
Cell proliferation; Cell division number; CFSE; Label structured population dynamics; Partial differential equations; Inverse problems; DIACETATE SUCCINIMIDYL ESTER; IN-VITRO; LYMPHOCYTE DIVISION; STABILITY CONDITIONS; DEATH RATES; T-CELLS; POPULATION; FLOW; DIFFERENTIATION; DISTRIBUTIONS;
D O I
10.1016/j.jim.2011.08.014
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
CFSE analysis of a proliferating cell population is a popular tool for the study of cell division and divisionlinked changes in cell behavior. Recently Banks et al. (2011), Luzyanina et al. (2009), Luzyanina et al. (2007), a partial differential equation (PDE) model to describe lymphocyte dynamics in a CFSE proliferation assay was proposed. We present a significant revision of this model which improves the physiological understanding of several parameters. Namely, the parameter used previously as a heuristic explanation for the dilution of CFSE dye by cell division is replaced with a more physical component, cellular autofluorescence. The rate at which label decays is also quantified using a Gompertz decay process, We then demonstrate a revised method of fitting the model to the commonly used histogram representation of the data. It is shown that these improvements result in a model with a strong physiological basis which is fully capable of replicating the behavior observed in the data. (C) 2011 Elsevier B.V. All rights reserved.
引用
收藏
页码:143 / 160
页数:18
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