Water interaction with α,α-trehalose:: molecular dynamics simulation

被引:59
|
作者
Bonanno, G
Noto, R
Fornili, SL
机构
[1] INFM, I-90123 Palermo, Italy
[2] Dept Phys & Astron Sci, I-90123 Palermo, Italy
[3] Inst Interdisciplinary Applicat Phys, CNR, I-90123 Palermo, Italy
关键词
D O I
10.1039/a804257h
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This paper reports on simulations of a rather large water-trehalose system, based on the AMBER compatible GLYCAM force-field (R. J. Woods, R. A. Dwek, C. J. Edge and B. Fraser-Reid, J. Phys. Chem., 1995, 99, 3832), whose applicability to trehalose has been carefully examined using ab initio quantum mechanical calculations to optimize the molecular geometry and to evaluate the net atomic charges. Statistical analyses of the simulation trajectories show that the structure and dynamics of the solvent are remarkably affected by the presence of trehalose. In particular, ca. 36 water molecules are found to reside in the first hydration shell, 19 of which are hydrogen bonded to trehalose. The water mobility within the first hydration shell is ca. 25% smaller than that of pure water.
引用
收藏
页码:2755 / 2762
页数:8
相关论文
共 50 条
  • [1] Molecular dynamics simulation study of the interaction of trehalose with lipid membranes
    Villarreal, MA
    Díaz, SB
    Disalvo, EA
    Montich, GG
    LANGMUIR, 2004, 20 (18) : 7844 - 7851
  • [2] INTERACTION OF WATER WITH ALPHA,ALPHA-TREHALOSE IN SOLUTION - MOLECULAR-DYNAMICS SIMULATION APPROACH
    DONNAMARIA, MC
    HOWARD, EI
    GRIGERA, JR
    JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS, 1994, 90 (18): : 2731 - 2735
  • [3] Molecular dynamics simulation of carboxy-myoglobin embedded in a trehalose-water matrix
    Cottone, G
    Cordone, L
    Ciccotti, G
    BIOPHYSICAL JOURNAL, 2001, 80 (02) : 931 - 938
  • [4] Molecular dynamics simulation of the microscopic interaction in Cu/water nanofluid
    Zhang, Liang
    Tian, Linchao
    Zhang, Anlong
    Qu, Pingping
    Jing, Yuyan
    Chen, Hemin
    2020 6TH INTERNATIONAL CONFERENCE ON ENERGY, ENVIRONMENT AND MATERIALS SCIENCE, 2020, 585
  • [5] Understanding interaction and dynamics of water molecules in the epoxy via molecular dynamics simulation
    Tam, Lik-ho
    Lau, Denvid
    Wu, Chao
    MOLECULAR SIMULATION, 2019, 45 (02) : 120 - 128
  • [6] Interaction of the disaccharide trehalose with a phospholipid bilayer:: A molecular dynamics study
    Pereira, CS
    Lins, RD
    Chandrasekhar, I
    Freitas, LCG
    Hünenberger, PH
    BIOPHYSICAL JOURNAL, 2004, 86 (04) : 2273 - 2285
  • [7] Molecular mechanism for the effects of trehalose on β-hairpin folding revealed by molecular dynamics simulation
    Liu, Fu-Feng
    Dong, Xiao-Yan
    Sun, Yan
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2008, 27 (04): : 421 - 429
  • [8] Water interaction with glycine betaine: A hybrid QM/MM molecular dynamics simulation
    Sironi, M
    Fornili, A
    Fornili, SL
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2001, 3 (06) : 1081 - 1085
  • [9] Molecular dynamics simulation of sub- and supercritical water with a new interaction potential
    Petrenko, V. E.
    Antipova, M. L.
    Ved, O. V.
    RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A, 2007, 81 (12) : 2016 - 2023
  • [10] Molecular dynamics simulation of sub-and supercritical water with a new interaction potential
    V. E. Petrenko
    M. L. Antipova
    O. V. Ved’
    Russian Journal of Physical Chemistry A, 2007, 81 : 2016 - 2023