Achieving Linear Scaling in Computational Cost for a Fully Polarizable MM/Continuum Embedding

被引:42
作者
Caprasecca, Stefano [1 ]
Jurinovich, Sandro [1 ]
Lagardere, Louis [2 ]
Stamm, Benjamin [3 ,4 ,5 ]
Lipparini, Filippo [2 ,3 ,6 ]
机构
[1] Univ Pisa, Dipartimento Chim & Chim Ind, I-56124 Pisa, Italy
[2] Univ Paris 06, Sorbonne Univ, Inst Calcul & Simulat, F-75005 Paris, France
[3] Univ Paris 06, Sorbonne Univ, Lab Jacques Louis Lions, UMR 7598, F-75005 Paris, France
[4] CNRS, UMR 7598, F-75005 Paris, France
[5] CNRS, UMR 7616, F-75005 Paris, France
[6] Univ Paris 06, Sorbonne Univ, Chim Theor Lab, UMR 7616, F-75005 Paris, France
基金
欧洲研究理事会;
关键词
ELECTRONIC-ENERGY TRANSFER; CONTINUUM SOLVATION MODELS; ANISOTROPIC DIELECTRICS; BIOMOLECULAR SYSTEMS; ENZYMATIC-REACTIONS; DIPOLE INTERACTION; AQUEOUS-SOLUTION; LARGE MOLECULES; FORCE-FIELD; QM/MM;
D O I
10.1021/ct501087m
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this paper, we present a new, efficient implementation of a fully polarizable QM/MM/continuum model based on an induced-dipoles polarizable force field and on the Conductor-like Screening Model as a polarizable continuum in combination with a self-consistent field QM method. The paper focuses on the implementation of the MM/continuum embedding, where the two polarizable methods are fully coupled to take into account their mutual polarization. With respect to previous implementations, we achieve for the first time a linear scaling with respect to both the computational cost and the memory requirements without limitations on the molecular cavity shape. This is achieved thanks to the use of the recently developed ddCOSMO model for the continuum and the Fast Multipole Method for the force field, together with an efficient iterative procedure. Therefore, it becomes possible to include in the classical layer as much as several tens of thousands of atoms with a limited computational effort.
引用
收藏
页码:694 / 704
页数:11
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