Exome sequencing in neonates: diagnostic rates, characteristics, and time to diagnosis

被引:29
作者
Powis, Zoe [1 ]
Hagman, Kelly D. Farwell [1 ]
Speare, Virginia [1 ]
Cain, Taylor [1 ]
Blanco, Kirsten [1 ]
Mowlavi, Layla S. [1 ]
Mayerhofer, Emily M. [1 ,2 ]
Tilstra, David [2 ]
Vedder, Timothy [2 ]
Hunter, Jesse M. [1 ]
Tsang, Marilyn [1 ]
Gonzalez, Lina [3 ]
Vockley, Gerald [3 ]
Tang, Sha [1 ]
机构
[1] Ambry Genet, Aliso Viejo, CA 92656 USA
[2] CentraCare Clin, St Cloud, MN USA
[3] Univ Pittsburgh, Med Ctr, Pittsburgh, PA USA
关键词
exome; genetic testing; neonatal; neonatal intensive care unit; NICU; MUTATIONS; GENES;
D O I
10.1038/gim.2018.11
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Purpose: Neonatal patients are particularly appropriate for utilization of diagnostic exome sequencing (DES), as many Mendelian diseases are known to present in this period of life but often with complex, heterogeneous features. We attempted to determine the diagnostic rates and features of neonatal patients undergoing DES. Methods: The clinical histories and results of 66 neonatal patients undergoing DES were retrospectively reviewed. Results: Clinical DES identified potentially relevant findings in 25 patients (37.9%). The majority of patients had structural anomalies such as birth defects, dysmorphic features, cardiac, craniofacial, and skeletal defects. The average time for clinical rapid testing was 8 days. Conclusion: Our observations demonstrate the utility of familybased exome sequencing in neonatal patients, including familial cosegregation analysis and comprehensive medical review.
引用
收藏
页码:1468 / 1471
页数:4
相关论文
共 19 条
  • [1] A method and server for predicting damaging missense mutations
    Adzhubei, Ivan A.
    Schmidt, Steffen
    Peshkin, Leonid
    Ramensky, Vasily E.
    Gerasimova, Anna
    Bork, Peer
    Kondrashov, Alexey S.
    Sunyaev, Shamil R.
    [J]. NATURE METHODS, 2010, 7 (04) : 248 - 249
  • [2] A global reference for human genetic variation
    Altshuler, David M.
    Durbin, Richard M.
    Abecasis, Goncalo R.
    Bentley, David R.
    Chakravarti, Aravinda
    Clark, Andrew G.
    Donnelly, Peter
    Eichler, Evan E.
    Flicek, Paul
    Gabriel, Stacey B.
    Gibbs, Richard A.
    Green, Eric D.
    Hurles, Matthew E.
    Knoppers, Bartha M.
    Korbel, Jan O.
    Lander, Eric S.
    Lee, Charles
    Lehrach, Hans
    Mardis, Elaine R.
    Marth, Gabor T.
    McVean, Gil A.
    Nickerson, Deborah A.
    Wang, Jun
    Wilson, Richard K.
    Boerwinkle, Eric
    Doddapaneni, Harsha
    Han, Yi
    Korchina, Viktoriya
    Kovar, Christie
    Lee, Sandra
    Muzny, Donna
    Reid, Jeffrey G.
    Zhu, Yiming
    Chang, Yuqi
    Feng, Qiang
    Fang, Xiaodong
    Guo, Xiaosen
    Jian, Min
    Jiang, Hui
    Jin, Xin
    Lan, Tianming
    Li, Guoqing
    Li, Jingxiang
    Li, Yingrui
    Liu, Shengmao
    Liu, Xiao
    Lu, Yao
    Ma, Xuedi
    Tang, Meifang
    Wang, Bo
    [J]. NATURE, 2015, 526 (7571) : 68 - +
  • [3] [Anonymous], NHLBI Exome Sequencing Project (ESP) Exome Variant Server
  • [4] [Anonymous], DAT SINGL NUCL POL
  • [5] A Prenatal Presentation of Severe Microcephaly and Brain Anomalies in a Patient With Novel Compound Heterozygous Mutations in the STIL Gene Found Postnatally With Exome Analysis
    Bennett, Harvey
    Presti, Amy
    Adams, Darius
    Rios, Jose
    Benito, Carlos
    Cohen, Daniel
    [J]. PEDIATRIC NEUROLOGY, 2014, 51 (03) : 434 - 436
  • [6] Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: results from 500 unselected families with undiagnosed genetic conditions
    Farwell, Kelly D.
    Shahmirzadi, Layla
    El-Khechen, Dima
    Powis, Zoee
    Chao, Elizabeth C.
    Davis, Brigette Tippin
    Baxter, Ruth M.
    Zeng, Wenqi
    Mroske, Cameron
    Parra, Melissa C.
    Gandomi, Stephanie K.
    Lu, Ira
    Li, Xiang
    Lu, Hong
    Lu, Hsiao-Mei
    Salvador, David
    Ruble, David
    Lao, Monica
    Fischbach, Soren
    Wen, Jennifer
    Lee, Shela
    Elliott, Aaron
    Dunlop, Charles L. M.
    Tang, Sha
    [J]. GENETICS IN MEDICINE, 2015, 17 (07) : 578 - 586
  • [7] Candidate-gene criteria for clinical reporting: diagnostic exome sequencing identifies altered candidate genes among 8% of patients with undiagnosed diseases
    Hagman, Kelly D. Farwell
    Shinde, Deepali N.
    Mroske, Cameron
    Smith, Erica
    Radtke, Kelly
    Shahmirzadi, Layla
    El-Khechen, Dima
    Powis, Zoe
    Chao, Elizabeth C.
    Alcaraz, Wendy A.
    Helbig, Katherine L.
    Sajan, Samin A.
    Rossi, Mari
    Lu, Hsiao-Mei
    Huether, Robert
    Li, Shuwei
    Wu, Sitao
    Nunes, Mark E.
    Tang, Sha
    [J]. GENETICS IN MEDICINE, 2017, 19 (02) : 224 - 235
  • [8] Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    Kumar, Prateek
    Henikoff, Steven
    Ng, Pauline C.
    [J]. NATURE PROTOCOLS, 2009, 4 (07) : 1073 - 1082
  • [9] Analysis of protein-coding genetic variation in 60,706 humans
    Lek, Monkol
    Karczewski, Konrad J.
    Minikel, Eric V.
    Samocha, Kaitlin E.
    Banks, Eric
    Fennell, Timothy
    O'Donnell-Luria, Anne H.
    Ware, James S.
    Hill, Andrew J.
    Cummings, Beryl B.
    Tukiainen, Taru
    Birnbaum, Daniel P.
    Kosmicki, Jack A.
    Duncan, Laramie E.
    Estrada, Karol
    Zhao, Fengmei
    Zou, James
    Pierce-Hollman, Emma
    Berghout, Joanne
    Cooper, David N.
    Deflaux, Nicole
    DePristo, Mark
    Do, Ron
    Flannick, Jason
    Fromer, Menachem
    Gauthier, Laura
    Goldstein, Jackie
    Gupta, Namrata
    Howrigan, Daniel
    Kiezun, Adam
    Kurki, Mitja I.
    Moonshine, Ami Levy
    Natarajan, Pradeep
    Orozeo, Lorena
    Peloso, Gina M.
    Poplin, Ryan
    Rivas, Manuel A.
    Ruano-Rubio, Valentin
    Rose, Samuel A.
    Ruderfer, Douglas M.
    Shakir, Khalid
    Stenson, Peter D.
    Stevens, Christine
    Thomas, Brett P.
    Tiao, Grace
    Tusie-Luna, Maria T.
    Weisburd, Ben
    Won, Hong-Hee
    Yu, Dongmei
    Altshuler, David M.
    [J]. NATURE, 2016, 536 (7616) : 285 - +
  • [10] Neonatal multiorgan failure due to ACAD9 mutation and complex I deficiency with mitochondrial hyperplasia in liver, cardiac myocytes, skeletal muscle, and renal tubules
    Leslie, Nancy
    Wang, Xinjian
    Peng, Yanyan
    Valencia, C. Alexander
    Khuchua, Zaza
    Hata, Jessica
    Witte, David
    Huang, Taosheng
    Bove, Kevin E.
    [J]. HUMAN PATHOLOGY, 2016, 49 : 27 - 32