Nature of biological water: a femtosecond study

被引:199
作者
Bhattacharyya, Kankan [1 ]
机构
[1] Indian Assoc Cultivat Sci, Dept Phys Chem, Kolkata 700032, India
关键词
D O I
10.1039/b800278a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The quasi-bound biological or structured water molecules in a protein play a key role in many biological processes. The dynamics of the biological water has been studied by femtosecond spectroscopy and large-scale computer simulations. Solvation dynamics of biological water displays an almost bulk-water like ultrafast component (similar to 1 ps) and a surprising slow component at the 100-1000 ps time scale. In this article, we discuss several examples of the ultraslow component, its possible origin and implications in biology. We show that the ultrafast (similar to 1 ps) component arises from an extended hydrogen bond network while the ultraslow component originates from binding of a water molecule to a biological macromolecule.
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收藏
页码:2848 / 2857
页数:10
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共 122 条
[1]  
Adhikari A, 2007, J PHYS CHEM B, V111, P12809, DOI [10.1021/jp075693l, 10.1021/jp0756931]
[2]   THE GROTTHUSS MECHANISM [J].
AGMON, N .
CHEMICAL PHYSICS LETTERS, 1995, 244 (5-6) :456-462
[3]   Power-law solvation dynamics in DNA over six decades in time [J].
Andreatta, D ;
Lustres, JLP ;
Kovalenko, SA ;
Ernsting, NP ;
Murphy, CJ ;
Coleman, RS ;
Berg, MA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (20) :7270-7271
[4]   Ultrafast dynamics in DNA: "fraying" at the end of the helix [J].
Andreatta, Daniele ;
Sen, Sobhan ;
Lustres, J. Luis Perez ;
Kovalenko, Sergey A. ;
Ernsting, Nikolaus P. ;
Murphy, Catherine J. ;
Coleman, Robert S. ;
Berg, Mark A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (21) :6885-6892
[5]   Interplay between ultrafast polar solvation and vibrational dynamics in electron transfer reactions: Role of high-frequency vibrational modes [J].
Bagchi, B ;
Gayathri, N .
ELECTRON TRANSFER-FROM ISOLATED MOLECULES TO BIOMOLECULES, PT 2, 1999, 107 :1-80
[6]   Water dynamics in the hydration layer around proteins and micelles [J].
Bagchi, B .
CHEMICAL REVIEWS, 2005, 105 (09) :3197-3219
[7]   Water as an active constituent in cell biology [J].
Ball, Philip .
CHEMICAL REVIEWS, 2008, 108 (01) :74-108
[8]   Secondary structure sensitivity of hydrogen bond lifetime dynamics in the protein hydration layer [J].
Bandyopadhyay, S ;
Chakraborty, S ;
Bagchi, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (47) :16660-16667
[9]   Sensitivity of polar solvation dynamics to the secondary structures of aqueous proteins and the role of surface exposure of the probe [J].
Bandyopadhyay, S ;
Chakraborty, S ;
Balasubramanian, S ;
Bagchi, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (11) :4071-4075
[10]   Solvation dynamics and proton transfer in supramolecular assemblies [J].
Bhattacharyya, K .
ACCOUNTS OF CHEMICAL RESEARCH, 2003, 36 (02) :95-101