nirS-Encoding denitrifier community composition, distribution, and abundance along the coastal wetlands of China

被引:68
作者
Gao, Juan [1 ]
Hou, Lijun [1 ]
Zheng, Yanling [1 ,2 ]
Liu, Min [2 ]
Yin, Guoyu [1 ,2 ]
Li, Xiaofei [2 ]
Lin, Xianbiao [2 ]
Yu, Chendi [1 ]
Wang, Rong [1 ]
Jiang, Xiaofen [1 ]
Sun, Xiuru [2 ]
机构
[1] East China Normal Univ, State Key Lab Estuarine & Coastal Res, Shanghai 200062, Peoples R China
[2] East China Normal Univ, Coll Geog Sci, Shanghai 200241, Peoples R China
基金
中国博士后科学基金;
关键词
Denitrification; nirS gene; Coastal wetlands; Temperature; Abundance; Community structure; EVOLUTIONARY GENETICS ANALYSIS; REDUCTASE GENES NIRK; OXYGEN MINIMUM ZONE; NITROGEN-CYCLE; AMMONIA OXIDIZERS; REACTIVE NITROGEN; NOSZ GENES; DIVERSITY; BACTERIA; NITRATE;
D O I
10.1007/s00253-016-7659-5
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
For the past few decades, human activities have intensively increased the reactive nitrogen enrichment in China's coastal wetlands. Although denitrification is a critical pathway of nitrogen removal, the understanding of denitrifier community dynamics driving denitrification remains limited in the coastal wetlands. In this study, the diversity, abundance, and community composition of nirS-encoding denitrifiers were analyzed to reveal their variations in China's coastal wetlands. Diverse nirS sequences were obtained and more than 98 % of them shared considerable phylogenetic similarity with sequences obtained from aquatic systems (marine/estuarine/coastal sediments and hypoxia sea water). Clone library analysis revealed that the distribution and composition of nirS-harboring denitrifiers had a significant latitudinal differentiation, but without a seasonal shift. Canonical correspondence analysis showed that the community structure of nirS-encoding denitrifiers was significantly related to temperature and ammonium concentration. The nirS gene abundance ranged from 4.3 x 10(5) to 3.7 x 10(7) copies g(-1) dry sediment, with a significant spatial heterogeneity. Among all detected environmental factors, temperature was a key factor affecting not only the nirS gene abundance but also the community structure of nirS-type denitrifiers. Overall, this study significantly enhances our understanding of the structure and dynamics of denitrifying communities in the coastal wetlands of China.
引用
收藏
页码:8573 / 8582
页数:10
相关论文
共 64 条
[1]   Archaeal ammonia oxidizers and nirS-type denitrifiers dominate sediment nitrifying and denitrifying populations in a subtropical macrotidal estuary [J].
Abell, Guy C. J. ;
Revill, Andrew T. ;
Smith, Craig ;
Bissett, Andrew P. ;
Volkman, John K. ;
Robert, Stanley S. .
ISME JOURNAL, 2010, 4 (02) :286-300
[2]   Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers [J].
Avrahami, S ;
Conrad, R ;
Braker, G .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (11) :5685-5692
[3]   Organic Matter Stoichiometry, Flux, and Oxygen Control Nitrogen Loss in the Ocean [J].
Babbin, Andrew R. ;
Keil, Richard G. ;
Devol, Allan H. ;
Ward, Bess B. .
SCIENCE, 2014, 344 (6182) :406-408
[4]   Riverine nitrogen export from the continents to the coasts [J].
Boyer, EW ;
Howarth, RW ;
Galloway, JN ;
Dentener, FJ ;
Green, PA ;
Vörösmarty, CJ .
GLOBAL BIOGEOCHEMICAL CYCLES, 2006, 20 (01)
[5]   Community structure of denitrifiers, Bacteria, and Archaea along redox gradients in pacific northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes [J].
Braker, G ;
Ayala-del-Río, HL ;
Devol, AH ;
Fesefeldt, A ;
Tiedje, JM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (04) :1893-1901
[6]  
Braker G, 1998, APPL ENVIRON MICROB, V64, P3769
[7]   Influence of temperature on the composition and activity of denitrifying soil communities [J].
Braker, Gesche ;
Schwarz, Julia ;
Conrad, Ralf .
FEMS MICROBIOLOGY ECOLOGY, 2010, 73 (01) :134-148
[8]   Sediment denitrifier community composition and nirS gene expression investigated with functional gene microarrays [J].
Bulow, Silvia E. ;
Francis, Christopher A. ;
Jackson, George A. ;
Ward, Bess B. .
ENVIRONMENTAL MICROBIOLOGY, 2008, 10 (11) :3057-3069
[9]   The Evolution and Future of Earth's Nitrogen Cycle [J].
Canfield, Donald E. ;
Glazer, Alexander N. ;
Falkowski, Paul G. .
SCIENCE, 2010, 330 (6001) :192-196
[10]   Molecular diversity of nitrite reductase genes (nirK) in nitrifying bacteria [J].
Cantera, J. Jason L. ;
Stein, Lisa Y. .
ENVIRONMENTAL MICROBIOLOGY, 2007, 9 (03) :765-776