Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge

被引:157
作者
Flores, Gilberto E. [1 ]
Campbell, James H. [2 ]
Kirshtein, Julie D. [3 ]
Meneghin, Jennifer [1 ]
Podar, Mircea [2 ]
Steinberg, Joshua I. [4 ]
Seewald, Jeffrey S. [5 ]
Tivey, Margaret Kingston [5 ]
Voytek, Mary A. [3 ,6 ]
Yang, Zamin K. [2 ]
Reysenbach, Anna-Louise [1 ]
机构
[1] Portland State Univ, Dept Biol, Portland, OR 97201 USA
[2] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37830 USA
[3] US Geol Survey, Reston, VA 20192 USA
[4] Oregon Episcopal Sch, Portland, OR 97223 USA
[5] Woods Hole Oceanog Inst, Marine Chem & Geochem Dept, Woods Hole, MA 02543 USA
[6] NASA, Washington, DC 20546 USA
基金
美国国家科学基金会;
关键词
DEEP-SEA; LUCKY-STRIKE; EPSILON-PROTEOBACTERIA; ULTRAMAFIC ROCKS; PHYLOGENETIC DIVERSITY; PHASE-SEPARATION; BLACK SMOKER; SP-NOV; FLUIDS; ARCHAEA;
D O I
10.1111/j.1462-2920.2011.02463.x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
To evaluate the effects of local fluid geochemistry on microbial communities associated with active hydrothermal vent deposits, we examined the archaeal and bacterial communities of 12 samples collected from two very different vent fields: the basalt-hosted Lucky Strike (37 degrees 17'N, 32 degrees 16.3'W, depth 1600-1750 m) and the ultramafic-hosted Rainbow (36 degrees 13'N, 33 degrees 54.1'W, depth 2270-2330 m) vent fields along the Mid-Atlantic Ridge (MAR). Using multiplexed barcoded pyrosequencing of the variable region 4 (V4) of the 16S rRNA genes, we show statistically significant differences between the archaeal and bacterial communities associated with the different vent fields. Quantitative polymerase chain reaction (qPCR) assays of the functional gene diagnostic for methanogenesis (mcrA), as well as geochemical modelling to predict pore fluid chemistries within the deposits, support the pyrosequencing observations. Collectively, these results show that the less reduced, hydrogen-poor fluids at Lucky Strike limit colonization by strict anaerobes such as methanogens, and allow for hyperthermophilic microaerophiles, like Aeropyrum. In contrast, the hydrogen-rich reducing vent fluids at the ultramafic-influenced Rainbow vent field support the prevalence of methanogens and other hydrogen-oxidizing thermophiles at this site. These results demonstrate that biogeographical patterns of hydrothermal vent microorganisms are shaped in part by large scale geological and geochemical processes.
引用
收藏
页码:2158 / 2171
页数:14
相关论文
共 73 条
[1]  
[Anonymous], 2006, Primer
[2]  
Benson DA, 2013, NUCLEIC ACIDS RES, V41, pD36, DOI [10.1093/nar/gkn723, 10.1093/nar/gkp1024, 10.1093/nar/gkw1070, 10.1093/nar/gkr1202, 10.1093/nar/gkx1094, 10.1093/nar/gkl986, 10.1093/nar/gkq1079, 10.1093/nar/gks1195, 10.1093/nar/gkg057]
[3]  
Boone D. R., 2001, Bergey's manual of systematic bacteriology, V1st
[4]   The versatile ε-proteobacteria:: key players in sulphidic habitats [J].
Campbell, Barbara J. ;
Engel, Annette Summers ;
Porter, Megan L. ;
Takai, Ken .
NATURE REVIEWS MICROBIOLOGY, 2006, 4 (06) :458-468
[5]   Estimating the number of species in a Stochastic abundance model [J].
Chao, A ;
Bunge, J .
BIOMETRICS, 2002, 58 (03) :531-539
[6]   Geochemistry of high H2 and CH4 vent fluids issuing from ultramafic rocks at the Rainbow hydrothermal field (36°14′N, MAR) [J].
Charlou, JL ;
Donval, JP ;
Fouquet, Y ;
Jean-Baptiste, P ;
Holm, N .
CHEMICAL GEOLOGY, 2002, 191 (04) :345-359
[7]   Compared geochemical signatures and the evolution of Menez Gwen (37°50′N) and Lucky Strike (37°17′N) hydrothermal fluids, south of the Azores Triple Junction on the Mid-Atlantic Ridge [J].
Charlou, JL ;
Donval, JP ;
Douville, E ;
Jean-Baptiste, P ;
Radford-Knoery, J ;
Fouquet, Y ;
Dapoigny, A ;
Stievenard, M .
CHEMICAL GEOLOGY, 2000, 171 (1-2) :49-75
[8]   Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine [J].
Claesson, Marcus J. ;
O'Sullivan, Orla ;
Wang, Qiong ;
Nikkilae, Janne ;
Marchesi, Julian R. ;
Smidt, Hauke ;
de Vos, Willem M. ;
Ross, R. Paul ;
O'Toole, Paul W. .
PLOS ONE, 2009, 4 (08)
[9]   The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].
Cole, J. R. ;
Wang, Q. ;
Cardenas, E. ;
Fish, J. ;
Chai, B. ;
Farris, R. J. ;
Kulam-Syed-Mohideen, A. S. ;
McGarrell, D. M. ;
Marsh, T. ;
Garrity, G. M. ;
Tiedje, J. M. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145
[10]   ESTIMATING TERRESTRIAL BIODIVERSITY THROUGH EXTRAPOLATION [J].
COLWELL, RK ;
CODDINGTON, JA .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1994, 345 (1311) :101-118