Transition pathways in a many-body system: Application to hydrogen-bond breaking in water

被引:59
作者
Csajka, FS [1 ]
Chandler, D [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
关键词
D O I
10.1063/1.476656
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We apply a stochastic method introduced by Dellago et al. [J. Chem. Phys. 108, 1964 (1998)] to sample transition paths in high-dimensional systems. The method connects two endpoint regions (for example a reactant and a product region) by a set of space-time paths. This approach is an importance sampling for rare events that does not require prior knowledge of the location of dynamical bottlenecks. Transition paths are generated with a weight corresponding to a chain of Metropolis Monte Carlo steps. We derive Monte Carlo algorithms and apply the technique to the dynamics of hydrogen-bond breaking in liquid water. We obtain averages in a transition path ensemble for the;structure: and energy along,the trajectory. While characterized by a rate constant, hydrogen-bond breaking in water occurs frequently enough to be studied by standard methods. The process therefore provides a useful test of path sampling methods. The comparison between path sampling and standard Monte Carlo demonstrate the feasibility of transition pad; sampling for a many-body system with a rough potential energy surface. (C) 1998 American Institute of Physics.
引用
收藏
页码:1125 / 1133
页数:9
相关论文
共 43 条
[1]  
Allen M. P., 1987, Computer Simulation of Liquids
[2]   STATISTICAL-THEORIES OF CHEMICAL REACTIONS - DISTRIBUTIONS IN TRANSITION REGION [J].
ANDERSON, JB .
JOURNAL OF CHEMICAL PHYSICS, 1973, 58 (10) :4684-4692
[3]  
BENNETT CH, ALGORITHMS CHEM COMP, P63
[4]  
Berendsen H., 1981, INTERMOLECULAR FORCE, V331, P331, DOI [DOI 10.1007/978-94-015-7658-1_21, 10.1007/978-94-015-7658, DOI 10.1007/978-94-015-7658]
[5]  
BERNE BJ, 1985, MULTIPLE TIME SCALES, P419
[6]  
BOLHUIS P, IN PRESS FARADAY DIS
[7]  
CERJAN CJ, 1980, J CHEM PHYS, V75, P7800
[8]   STATISTICAL-MECHANICS OF ISOMERIZATION DYNAMICS IN LIQUIDS AND TRANSITION-STATE APPROXIMATION [J].
CHANDLER, D .
JOURNAL OF CHEMICAL PHYSICS, 1978, 68 (06) :2959-2970
[9]  
Chen S.H., 1986, ADV CHEM PHYS, V64, P1, DOI [10.1002/9780470142882, DOI 10.1002/9780470142882]
[10]  
CLELAND JL, 1993, PROTEIN FOLDING IN V