Creating morphable logic gates using logical stochastic resonance in an engineered gene network

被引:50
作者
Dari, Anna [1 ]
Kia, Behnam [1 ,2 ]
Bulsara, Adi R. [3 ]
Ditto, William [1 ]
机构
[1] Arizona State Univ, Sch Biol & Hlth Syst Engn, Tempe, AZ 85287 USA
[2] Arizona State Univ, Sch Elect Comp & Energy Engn, Tempe, AZ 85287 USA
[3] SPAWAR Syst Ctr Pacific, San Diego, CA 92152 USA
关键词
LAMBDA-REPRESSOR; NOISE; CRO; EXPRESSION; CIRCUIT; SWITCH; CELL;
D O I
10.1209/0295-5075/93/18001
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The idea of Logical Stochastic Resonance is adapted and applied to an autoregulatory gene network in the bacteriophage lambda. This biological logic gate can emulate or morph the AND and OR gates, through varying internal system parameters, in a noisy background. Such logic gates afford intriguing possibilities in the realization of engineered genetic networks, in which the function of the gate can be changed after the network has been assembled: this allows a single gene network to be used for many different applications in the emerging field of synthetic biology. Copyright (C) EPLA, 2011
引用
收藏
页数:5
相关论文
共 20 条
[1]   A synthetic phage λ regulatory circuit [J].
Atsumi, Shota ;
Little, John W. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (50) :19045-19050
[2]   Stochastic gene expression in a single cell [J].
Elowitz, MB ;
Levine, AJ ;
Siggia, ED ;
Swain, PS .
SCIENCE, 2002, 297 (5584) :1183-1186
[3]   Construction of a genetic toggle switch in Escherichia coli [J].
Gardner, TS ;
Cantor, CR ;
Collins, JJ .
NATURE, 2000, 403 (6767) :339-342
[4]   Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome [J].
Gibson, Daniel G. ;
Glass, John I. ;
Lartigue, Carole ;
Noskov, Vladimir N. ;
Chuang, Ray-Yuan ;
Algire, Mikkel A. ;
Benders, Gwynedd A. ;
Montague, Michael G. ;
Ma, Li ;
Moodie, Monzia M. ;
Merryman, Chuck ;
Vashee, Sanjay ;
Krishnakumar, Radha ;
Assad-Garcia, Nacyra ;
Andrews-Pfannkoch, Cynthia ;
Denisova, Evgeniya A. ;
Young, Lei ;
Qi, Zhi-Qing ;
Segall-Shapiro, Thomas H. ;
Calvey, Christopher H. ;
Parmar, Prashanth P. ;
Hutchison, Clyde A., III ;
Smith, Hamilton O. ;
Venter, J. Craig .
SCIENCE, 2010, 329 (5987) :52-56
[5]   A Noise-Assisted Reprogrammable Nanomechanical Logic Gate [J].
Guerra, Diego N. ;
Bulsara, Adi R. ;
Ditto, William L. ;
Sinha, Sudeshna ;
Murali, K. ;
Mohanty, P. .
NANO LETTERS, 2010, 10 (04) :1168-1171
[6]   Engineered gene circuits [J].
Hasty, J ;
McMillen, D ;
Collins, JJ .
NATURE, 2002, 420 (6912) :224-230
[7]   Noise-based switches and amplifiers for gene expression [J].
Hasty, J ;
Pradines, J ;
Dolnik, M ;
Collins, JJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (05) :2075-2080
[8]   Designer gene networks: Towards fundamental cellular control [J].
Hasty, J ;
Isaacs, F ;
Dolnik, M ;
McMillen, D ;
Collins, JJ .
CHAOS, 2001, 11 (01) :207-220
[9]   Prediction and measurement of an autoregulatory genetic module [J].
Isaacs, FJ ;
Hasty, J ;
Cantor, CR ;
Collins, JJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (13) :7714-7719
[10]   LAMBDA-REPRESSOR AND CRO - COMPONENTS OF AN EFFICIENT MOLECULAR SWITCH [J].
JOHNSON, AD ;
POTEETE, AR ;
LAUER, G ;
SAUER, RT ;
ACKERS, GK ;
PTASHNE, M .
NATURE, 1981, 294 (5838) :217-223