Prospective Molecular Profiling of Circulating Tumor Cells from Patients with Melanoma Receiving Combinatorial Immunotherapy

被引:23
作者
Lin, Selena Y. [1 ]
Chang, Shu-Ching [2 ]
Lam, Stella [1 ]
Ramos, Romela Irene [1 ]
Tran, Kevin [1 ]
Ohe, Shuichi [1 ]
Salomon, Matthew P. [1 ]
Bhagat, Ali Asgar S. [3 ,4 ]
Lim, Chwee Teck [3 ,4 ]
Fischer, Trevan D. [5 ]
Foshag, Leland J. [5 ]
Boley, Christine L. [6 ]
O'Day, Steven J. [6 ]
Hoon, Dave S. B. [1 ]
机构
[1] St Johns Hlth Ctr, John Wayne Canc Inst, Dept Translat Mol Med, PHS, Santa Monica, CA USA
[2] Providence St Joseph Hlth, Med Data Res Ctr, Portland, OR USA
[3] Natl Univ Singapore, Dept Biomed Engn, Singapore, Singapore
[4] Natl Univ Singapore, Dept Mech Engn, Singapore, Singapore
[5] John Wayne Canc Inst, Dept Surg Oncol, PHS, Santa Monica, CA 90404 USA
[6] John Wayne Canc Inst, Dept Immunooncol & Clin Res, PHS, Santa Monica, CA 90404 USA
关键词
STAGE-III MELANOMA; CUTANEOUS MELANOMA; NODE METASTASIS; BETA-CATENIN; EXPRESSION; DISEASE; BIOCHEMOTHERAPY; CLASSIFICATION; HETEROGENEITY; PREDICTION;
D O I
10.1373/clinchem.2019.307140
中图分类号
R446 [实验室诊断]; R-33 [实验医学、医学实验];
学科分类号
1001 ;
摘要
BACKGROUND: Blood molecular profiling of circulating tumor cells (CTCs) can enable monitoring of patients with metastatic melanoma during checkpoint inhibitor immunotherapy (CII) and in combination with targeted therapies. We developed a microfluidics-based CTC platform to explore CTC profiling utility in CII-treated patients with melanoma using a melanoma messenger RNA (mRNA)/DNA biomarker panel. METHODS: Blood samples (n = 213) were collected prospectively from 75 American Joint Committee on Cancer-staged III/IV melanoma patients during CII treatment and those enriched for CTCs. CTC profiling was performed using 5 known melanoma mRNA biomarkers and BRAF V600E DNA mutation. CTC biomarker status associations with clinical outcomes were assessed. RESULTS: CTCs were detected in 88% of blood samples from patients with melanoma. CTC-derived biomarkers and clinical variables analyzed using classification and regression tree analysis revealed that a combination of lactate dehydrogenase, CTC-mRNA biomarkers, and tumor BRAF-mutation status was indicative of clinical outcomes for patients with stage IV melanoma (n = 52). The panel stratified low-risk and high-risk patients, whereby the latter had poor disease-free (P = 0.03) and overall survival (P = 0.02). Incorporation of a DNA biomarker with mRNA profiling increased overall CTC-detection capability by 57% compared to mRNA profiling only. RNA sequencing of isolated CTCs identified significant catenin beta 1 (CTNNB1) overexpression (P <0.01) compared to nondisease donor blood. CTC-CTNNB1 was associated with progressive disease/stable disease compared to complete-responder patient status (P = 0.02). Serial CTC profiling identified subclinical disease in patients who developed progressive disease during treatment/follow-up. CONCLUSIONS: CTC-derived mRNA/DNA biomarkers have utility for monitoring CII, targeted, and combinatorial therapies in metastatic melanoma patients. (C) 2019 American Association for Clinical Chemistry
引用
收藏
页码:169 / 177
页数:9
相关论文
共 36 条
[1]   Genomic Classification of Cutaneous Melanoma [J].
Akbani, Rehan ;
Akdemir, Kadir C. ;
Aksoy, B. Arman ;
Albert, Monique ;
Ally, Adrian ;
Amin, Samirkumar B. ;
Arachchi, Harindra ;
Arora, Arshi ;
Auman, J. Todd ;
Ayala, Brenda ;
Baboud, Julien ;
Balasundaram, Miruna ;
Balu, Saianand ;
Barnabas, Nandita ;
Bartlett, John ;
Bartlett, Pam ;
Bastian, Boris C. ;
Baylin, Stephen B. ;
Behera, Madhusmita ;
Belyaev, Dmitry ;
Benz, Christopher ;
Bernard, Brady ;
Beroukhim, Rameen ;
Bir, Natalie ;
Black, Aaron D. ;
Bodenheimer, Tom ;
Boice, Lori ;
Boland, Genevieve M. ;
Bono, Riccardo ;
Bootwalla, Moiz S. ;
Bosenberg, Marcus ;
Bowen, Jay ;
Bowlby, Reanne ;
Bristow, Christopher A. ;
Brockway-Lunardi, Laura ;
Brooks, Denise ;
Brzezinski, Jakub ;
Bshara, Wiam ;
Buda, Elizabeth ;
Burns, William R. ;
Butterfield, Yaron S. N. ;
Button, Michael ;
Calderone, Tiffany ;
Cappellini, Giancarlo Antonini ;
Carter, Candace ;
Carter, Scott L. ;
Cherney, Lynn ;
Cherniack, Andrew D. ;
Chevalier, Aaron ;
Chin, Lynda .
CELL, 2015, 161 (07) :1681-1696
[2]   Circulating Tumor Cells: Liquid Biopsy of Cancer [J].
Alix-Panabieres, Catherine ;
Pantel, Klaus .
CLINICAL CHEMISTRY, 2013, 59 (01) :110-118
[3]  
[Anonymous], 2018, R LANG ENV STAT COMP
[4]   The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans [J].
Ardlie, Kristin G. ;
DeLuca, David S. ;
Segre, Ayellet V. ;
Sullivan, Timothy J. ;
Young, Taylor R. ;
Gelfand, Ellen T. ;
Trowbridge, Casandra A. ;
Maller, Julian B. ;
Tukiainen, Taru ;
Lek, Monkol ;
Ward, Lucas D. ;
Kheradpour, Pouya ;
Iriarte, Benjamin ;
Meng, Yan ;
Palmer, Cameron D. ;
Esko, Tonu ;
Winckler, Wendy ;
Hirschhorn, Joel N. ;
Kellis, Manolis ;
MacArthur, Daniel G. ;
Getz, Gad ;
Shabalin, Andrey A. ;
Li, Gen ;
Zhou, Yi-Hui ;
Nobel, Andrew B. ;
Rusyn, Ivan ;
Wright, Fred A. ;
Lappalainen, Tuuli ;
Ferreira, Pedro G. ;
Ongen, Halit ;
Rivas, Manuel A. ;
Battle, Alexis ;
Mostafavi, Sara ;
Monlong, Jean ;
Sammeth, Michael ;
Mele, Marta ;
Reverter, Ferran ;
Goldmann, Jakob M. ;
Koller, Daphne ;
Guigo, Roderic ;
McCarthy, Mark I. ;
Dermitzakis, Emmanouil T. ;
Gamazon, Eric R. ;
Im, Hae Kyung ;
Konkashbaev, Anuar ;
Nicolae, Dan L. ;
Cox, Nancy J. ;
Flutre, Timothee ;
Wen, Xiaoquan ;
Stephens, Matthew .
SCIENCE, 2015, 348 (6235) :648-660
[5]   Classification and regression tree (CART) analysis of endometrial carcinoma: Seeing the forest for the trees [J].
Barlin, Joyce N. ;
Zhou, Qin ;
St Clair, Caryn M. ;
Iasonos, Alexia ;
Soslow, Robert A. ;
Alektiar, Kaled M. ;
Hensley, Martee L. ;
Leitao, Mario M., Jr. ;
Barakat, Richard R. ;
Abu-Rustum, Nadeem R. .
GYNECOLOGIC ONCOLOGY, 2013, 130 (03) :452-456
[6]   Novel patterns of response under immunotherapy [J].
Borcoman, E. ;
Kanjanapan, Y. ;
Champiat, S. ;
Kato, S. ;
Servois, V. ;
Kurzrock, R. ;
Goel, S. ;
Bedard, P. ;
Le Tourneau, C. .
ANNALS OF ONCOLOGY, 2019, 30 (03) :385-396
[7]   Expression of Melan-A (MART1) in benign melanocytic nevi and primary cutaneous malignant melanoma [J].
Busam, KJ ;
Chen, YT ;
Old, LJ ;
Stockert, E ;
Iversen, K ;
Coplan, KA ;
Rosai, J ;
Barnhill, RL ;
Jungbluth, AA .
AMERICAN JOURNAL OF SURGICAL PATHOLOGY, 1998, 22 (08) :976-982
[8]  
Bustos MA, 2017, GENOM DATA, V12, P14, DOI 10.1016/j.gdata.2017.01.002
[9]   Genome-Wide Characterization of Circulating Tumor Cells Identifies Novel Prognostic Genomic Alterations in Systemic Melanoma Metastasis [J].
Chiu, Connie G. ;
Nakamura, Yoshitaka ;
Chong, Kelly K. ;
Huang, Sharon K. ;
Kawas, Neal P. ;
Triche, Timothy ;
Elashoff, David ;
Kiyohara, Eiji ;
Irie, Reiko F. ;
Morton, Donald L. ;
Hoon, Dave S. B. .
CLINICAL CHEMISTRY, 2014, 60 (06) :873-885
[10]   Serum lactate dehydrogenase as an early marker for outcome in patients treated with anti-PD-1 therapy in metastatic melanoma [J].
Diem, S. ;
Kasenda, B. ;
Spain, L. ;
Martin-Liberal, J. ;
Marconcini, R. ;
Gore, M. ;
Larkin, J. .
BRITISH JOURNAL OF CANCER, 2016, 114 (03) :256-261