Theoretical study of the structure and stability of the dimers of heme analogues (MC34H32N4O4)2 and their ions (MC34H32N4O4)2+ with 3d-metal atoms M

被引:4
作者
Charkin, O. P.
Klimenko, N. M.
Charkin, D. O.
Lin, S. H.
机构
[1] Russian Acad Sci, Inst Problems Chem Phys, Moscow 142432, Russia
[2] Lomonosov State Acad Fine Chem Technol, Moscow 117571, Russia
[3] Moscow MV Lomonosov State Univ, Moscow 119992, Russia
[4] Acad Sinica, Inst Atom & Mol Sci, Taipei 106, Taiwan
关键词
D O I
10.1134/S0036023607080153
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
The electronic and geometric structures and the energetic characteristics of a series of monomeric MC34H32N4O40,+ and dimeric (MC34H32N4O4)(2)(0,+) molecules, heme analogues and their positively charged ions with 3d-metal atoms M = Ti, V, Cr, and Mn, have been calculated by the density functional theory B3LYP method with the Gen-1 = 6-31G*(Fe) + 6-31G(C, H, N, O) and Gen-2 = 6-311+G* (Fe) + 6-31G* (C, H, N, O) basis sets. The computation results are compared with the analogous calculated data on the heme dimers (heme)(2)(0,+) . Computations show that for the (MC34H32N4O4)(2)(0,+) dimers, high-spin states are preferable. In these dimers, the rings are linked with each other by a pair of M-carbonyl bridges M center dot center dot center dot O-b=C(OH) and a pair of hydrogen bridges OHb center dot center dot center dot N. The calculated energies of dissociation D of the dimers into monomers point to a rather high stability of the dimers at the beginning of the 3d series (D similar to 2.3-3.6 eV for M = Ti, V), which decreases rapidly as the atomic number of M increases (D similar to 0.5 eV for M = Cr and similar to 0.4 eV for (heme)(2)). The positive ions (MC34H32N4O4)(2)(+) are similar to 0.8-1.0 eV are more stable to dissociation than their neutral congeners (MC34H32N4O4)(2). The trends in the behavior of the energetic and structural characteristics of the dimers (distances R(M-N), displacements of M atoms from the porphyrin ring plane, parameters of the carbonyl and hydrogen bridges, character of ring distortions, etc.), as well as in the spin density distribution between the metal atoms and the rings in the monomers MC34H32N4O4 and dimers (MC34H32N4O4)(2) caused by their ionization and going along the 3d series, are examined. In the mixed dimer (FeC34H32N4O4)(VC34H32N4O4), the rings are linked by only one strong carbonyl bridge V center dot center dot center dot O-b=C(OH), with some contribution made by the neighboring hydrogen bridge. The dissociation energy of this mixed dimer into monomers is close to a half of the dissociation energy of the "symmetric" dimer (VC34H32N4O4)(2).
引用
收藏
页码:1248 / 1261
页数:14
相关论文
共 13 条
[1]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[2]   Aggregated heme detoxification byproducts in malarial trophozoites:: β-hematin and malaria pigment have a single S=5/2 iron environment in the bulk phase as determined by EPR and magnetic Mossbauer spectroscopy [J].
Bohle, DS ;
Debrunner, P ;
Jordan, PA ;
Madsen, SK ;
Schulz, CE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (32) :8255-8256
[3]   Theoretical study of "deep" fragmentation of hemin ion with successive loss of methyl and vinyl groups [J].
Charkin, O. P. ;
Klimenko, N. M. ;
Nguyen, T. P. ;
Charkin, D. O. ;
Wang, Y. -S. ;
Chang, H. -C. ;
Lin, S. H. .
RUSSIAN JOURNAL OF INORGANIC CHEMISTRY, 2006, 51 (10) :1613-1622
[4]   Theoretical study of the structure and stability of the ferriporphyrin dimer (Fe(III)C34H31N4O4)2 [J].
Charkin, O. P. ;
Klimenko, N. M. ;
Charkin, D. O. ;
Wang, Y. -S. ;
Wei, S. -C. ;
Chang, H. -C. ;
Lin, S. H. .
RUSSIAN JOURNAL OF INORGANIC CHEMISTRY, 2006, 51 (01) :89-98
[5]   Fragmentation of heme and hemin+ with sequential loss of carboxymethyl groups: A DFT and mass-spectrometry study [J].
Charkin, OP ;
Klimenko, NM ;
Nguyen, PT ;
Charkin, DO ;
Mebel, AM ;
Lin, SH ;
Wang, YS ;
Wei, SC ;
Chang, HC .
CHEMICAL PHYSICS LETTERS, 2005, 415 (4-6) :362-369
[6]  
Charkin OP, 2005, RUSS J INORG CHEM+, V50, P1398
[7]  
CHARKIN OP, 2006, IN PRESS J CHEM PHYS, V121
[8]  
CHARKIN OP, 2006, IN PRESS RUSS J INOR, V52
[9]  
Frish M.J., 2003, GAUSSIAN 03 REVISION
[10]  
Kadish K.M., 2000, The Porphyrin Handbook