Pseudomonas guryensis sp. nov. and Pseudomonas ullengensis sp. nov., isolated from soil

被引:15
作者
Kim, Chung Mi [1 ]
Jeong, Ji Won [1 ]
Lee, Dong Hyeon [1 ]
Kim, Seung Bum [1 ]
机构
[1] Chungnam Natl Univ, Coll Biosci & Biotechnol, Dept Microbiol & Mol Biol, 99 Daehak Ro, Yuseong 34134, Daejeon, South Korea
关键词
Pseudomonas guryensis; Pseudomonas ullengensis; soil; biosynthetic gene cluster; RIBOSOMAL-RNA; TAXONOMY;
D O I
10.1099/ijsem.0.005082
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two Gram- staining- negative, aerobic, rod- shaped bacteria designated strains SR9T and UL070T, were isolated from soil and subjected to taxonomic characterization. Strain SR9T grew at 10-37 degrees C (optimum 30 degrees C), at pH 4.0-10.0 (optimum pH 8.0) and in the presence of 0-1 % NaCl (optimum 0 %), and UL070T at 4-33 degrees C (optimum 30 degrees C), at pH 4.0-10.0 (optimum pH 7.0) and in the presence of 0-2 % NaCl (optimum 0 %), respectively. Strain UL070T was motile with flagella. Analysis of 16S rRNA gene sequences indicated that the two strains fell into phylogenetic clusters belonging to the genus Pseudomonas. Both strains SR9T and UL070T were mostly related to Pseudomonas campi S1-A32-2T with 99.70 and 99.01% sequence similarities, and the similarity between the two isolates was 98.90 %. The genome- based in silico analyses indicated that each of the strains SR9T and UL070T was clearly separated from other species of Pseudomonas, as the orthologous average nucleotide identity (OrthoANI) and the digital DNA-DNA hybridization (dDDH) values were no higher than 93.09 and 50.03% respectively with any related species, which were clearly below the cutoff for species distinction. The fatty acid profiles of the two strains mainly consisting of unsaturated components, the presence of ubiquinone 9 (Q- 9) as the major respiratory quinone, and phosphatidylethanolamine (PE) and diphosphatidylglycerol (DPG) as the diagnostic polar lipids were consistent with their classification into Pseudomonas. The DNA G+C contents of strains SR9T and UL070T were 63.2 mol% and 63.6 mol% respectively. On the basis of both phenotypic and phylogenetic evidences, each of the isolated strains should be classified as a novel species, for which the names Pseudomonas guryensis sp. nov. (type strain=SR9T=KCTC 82228T=JCM 34509T) and Pseudomonas ullengensis sp. nov. (type strain=UL070T=KCTC 82229T=JCM 34510T) are proposed.
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页数:6
相关论文
共 26 条
[1]   Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence [J].
Anzai, Y ;
Kim, H ;
Park, JY ;
Wakabayashi, H ;
Oyaizu, H .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :1563-1589
[2]   antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline [J].
Blin, Kai ;
Shaw, Simon ;
Steinke, Katharina ;
Villebro, Rasmus ;
Ziemert, Nadine ;
Lee, Sang Yup ;
Medema, Marnix H. ;
Weber, Tilmann .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W81-W87
[3]   Pseudomonas guineae sp nov., a novel psychrotolerant bacterium from an Antarctic environment [J].
Bozal, Nuria ;
Montes, M. Jesus ;
Mercade, Elena .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :2609-2612
[4]  
Chun J, 2018, INT J SYST EVOL MICR, V68, P461, DOI [10.1099/ijsem.0.002516, 10.1099/ijsem.0.002532]
[5]  
Cowan ST., 1993, MANUAL IDENTIFICATIO, V3rd
[6]   Genomics of secondary metabolite production by Pseudomonas spp [J].
Gross, Harald ;
Loper, Joyce E. .
NATURAL PRODUCT REPORTS, 2009, 26 (11) :1408-1446
[7]   EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes [J].
Jeon, Yoon-Seong ;
Lee, Kihyun ;
Park, Sang-Cheol ;
Kim, Bong-Soo ;
Cho, Yong-Joon ;
Ha, Sung-Min ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :689-691
[8]   Kitasatospora acidiphila sp. nov., isolated from pine grove soil, exhibiting antimicrobial potential [J].
Kim, Min Ji ;
Roh, Su Gwon ;
Kim, Min-Kyeong ;
Park, Changwoo ;
Kim, Seil ;
Kim, Seung Bum .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (10) :5567-5575
[9]   Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes [J].
Kim, Mincheol ;
Oh, Hyun-Seok ;
Park, Sang-Cheol ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :346-351
[10]   Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species [J].
Kim, Ok-Sun ;
Cho, Yong-Joon ;
Lee, Kihyun ;
Yoon, Seok-Hwan ;
Kim, Mincheol ;
Na, Hyunsoo ;
Park, Sang-Cheol ;
Jeon, Yoon Seong ;
Lee, Jae-Hak ;
Yi, Hana ;
Won, Sungho ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :716-721