Integrated analysis of leaf morphological and color traits in different populations of Chinese cabbage (Brassica rapa ssp pekinensis)

被引:12
|
作者
Choi, Su Ryun [1 ]
Yu, Xiaona [1 ]
Dhandapani, Vignesh [1 ]
Li, Xiaonan [2 ]
Wang, Zhi [3 ]
Lee, Seo Yeon [1 ]
Oh, Sang Heon [1 ]
Pang, Wenxing [2 ]
Ramchiary, Nirala [4 ]
Hong, Chang Pyo [5 ]
Park, Suhyoung [6 ]
Piao, Zhongyun [2 ]
Kim, HyeRan [7 ]
Lim, Yong Pyo [1 ]
机构
[1] Chungnam Natl Univ, Dept Hort, Daejeon, South Korea
[2] Shenyang Agr Univ, Dept Hort, Shenyang, Peoples R China
[3] Northwest A&F Univ, Inst Soil & Water Conservat, Yangling, Peoples R China
[4] Jawaharlal Nehru Univ, Sch Life Sci, New Delhi, India
[5] TheragenEtex, Theragen Bio Inst, Suwon, South Korea
[6] Natl Inst Hort & Herbal Sci, Vegetable Res Div, Wanju Gun, Jeollabuk Do, South Korea
[7] KRIBB, Plant Syst Engn Res Ctr, Daejeon, South Korea
关键词
GENETIC-LINKAGE MAP; GENOME SEQUENCING PROJECT; ORYZA-SATIVA L; CHLOROPHYLL CONTENT; CELL-PROLIFERATION; ARABIDOPSIS-THALIANA; FLOWERING TIME; CANDIDATE GENE; MARKERS; LOCI;
D O I
10.1007/s00122-017-2914-4
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
QTLs and candidate gene markers associated with leaf morphological and color traits were identified in two immortalized populations of Brassica rapa, which will provide genetic information for marker-assisted breeding. Brassica rapa is an important leafy vegetable consumed worldwide and morphology is a key character for its breeding. To enhance genetic control, quantitative trait loci (QTLs) for leaf color and plant architecture were identified using two immortalized populations with replications of 2 and 4 years. Overall, 158 and 80 QTLs associated with 23 and 14 traits were detected in the DH and RIL populations, respectively. Among them, 23 common robust-QTLs belonging to 12 traits were detected in common loci over the replications. Through comparative analysis, five crucifer genetic blocks corresponding to morphology trait (R, J&U, F and E) and color trait (F, E) were identified in three major linkage groups (A2, A3 and A7). These might be key conserved genomic regions involved with the respective traits. Through synteny analysis with Arabidopsis, 64 candidate genes involved in chlorophyll biosynthesis, cell proliferation and elongation were co-localized within QTL intervals. Among them, SCO3, ABI3, FLU, HCF153, HEMB1, CAB3 were mapped within QTLs for leaf color; and CYCD3;1, CYCB2;4, AN3, ULT1 and ANT were co-localized in QTL regions for leaf size. These robust QTLs and their candidate genes provide useful information for further research into leaf architecture with crop breeding.
引用
收藏
页码:1617 / 1634
页数:18
相关论文
共 50 条
  • [41] Mapping of a Pale Green Mutant Gene and Its Functional Verification by Allelic Mutations in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)
    Zhao, Yonghui
    Huang, Shengnan
    Zhang, Meidi
    Zhang, Yun
    Feng, Hui
    FRONTIERS IN PLANT SCIENCE, 2021, 12
  • [42] Comparative Transcriptome Analysis Reveals Heat-Responsive Genes in Chinese Cabbage (Brassica rapa ssp chinensis)
    Wang, Aihua
    Hu, Jihong
    Huang, Xingxue
    Li, Xia
    Zhou, Guolin
    Yan, Zhixiang
    FRONTIERS IN PLANT SCIENCE, 2016, 7
  • [43] Delayed flowering time in Arabidopsis and Brassica rapa by the overexpression of FLOWERING LOCUS C (FLC) homologs isolated from Chinese cabbage (Brassica rapaL. ssp. pekinensis)
    Soo-Yun Kim
    Beom-Seok Park
    Soo-Jin Kwon
    Jungsun Kim
    Myung-Ho Lim
    Young-Doo Park
    Dool Yi Kim
    Seok-Chul Suh
    Yong-Moon Jin
    Ji Hoon Ahn
    Yeon-Hee Lee
    Plant Cell Reports, 2007, 26 : 327 - 336
  • [44] Expression patterns of HDA9, HDA6 and FLD in Chinese cabbage (Brassica rapa L. ssp. pekinensis) under different photoperiods and their protein interactions
    Ma, Guanpeng
    Zhou, Linbi
    Liu, Lian
    Zhao, Daqin
    BRAZILIAN JOURNAL OF BOTANY, 2023, 46 (03) : 549 - 561
  • [45] iTRAQ analysis of protein profile during the secondary stage of infection of Plasmodiophora brassicae in Chinese cabbage (Brassica rapa subsp pekinensis)
    Su, Tongbing
    Yu, Shuancang
    Wang, Weihong
    Li, Peirong
    Zhang, Fenglan
    Yu, Yangjun
    Zhang, Deshuang
    Zhao, Xiuyun
    JOURNAL OF PLANT PATHOLOGY, 2018, 100 (03) : 533 - 542
  • [46] Whole transcriptome analysis and construction of a ceRNA regulatory network related to leaf and petiole development in Chinese cabbage (Brassica campestris L. ssp. pekinensis)
    Shi, Fengyan
    Zhao, Zifan
    Jiang, Yang
    Liu, Song
    Tan, Chong
    Liu, Chuanhong
    Ye, Xueling
    Liu, Zhiyong
    BMC GENOMICS, 2023, 24 (01)
  • [47] Map-Based Cloning and Characterization of Br-dyp1, a Gene Conferring Dark Yellow Petal Color Trait in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)
    Yang, Shuangjuan
    Liu, Honglei
    Zhao, Yanyan
    Su, Henan
    Wei, Xiaochun
    Wang, Zhiyong
    Zhao, Xiaobin
    Zhang, Xiao-Wei
    Yuan, Yuxiang
    FRONTIERS IN PLANT SCIENCE, 2022, 13
  • [48] Phytohormonal and metabolism analysis of Brassica rapa L. ssp. pekinensis with different resistance during Plasmodiophora brassicae infection
    Lan, Mei
    Hu, Jingfeng
    Yang, Hongli
    Zhang, Liqin
    Xu, Xuezhong
    He, Jiangming
    BIOCELL, 2020, 44 (04) : 751 - 767
  • [49] Growth and physiological response to manganese toxicity in Chinese cabbage (Brassica rapa L. ssp campestris)
    Lee, Taek Jong
    Luitel, Binod Prasad
    Kang, Won Hee
    HORTICULTURE ENVIRONMENT AND BIOTECHNOLOGY, 2011, 52 (03) : 252 - 258
  • [50] BrACOS5 mutations induced male sterility via impeding pollen exine formation in Chinese cabbage (Brassica rapa L. ssp. pekinensis)
    Zou, Jiaqi
    Dong, Shiyao
    Fang, Bing
    Zhao, Ying
    Song, Gengxing
    Xin, Yue
    Huang, Shengnan
    Feng, Hui
    THEORETICAL AND APPLIED GENETICS, 2023, 136 (01) : 1 - 18