Integrated analysis of leaf morphological and color traits in different populations of Chinese cabbage (Brassica rapa ssp pekinensis)

被引:12
|
作者
Choi, Su Ryun [1 ]
Yu, Xiaona [1 ]
Dhandapani, Vignesh [1 ]
Li, Xiaonan [2 ]
Wang, Zhi [3 ]
Lee, Seo Yeon [1 ]
Oh, Sang Heon [1 ]
Pang, Wenxing [2 ]
Ramchiary, Nirala [4 ]
Hong, Chang Pyo [5 ]
Park, Suhyoung [6 ]
Piao, Zhongyun [2 ]
Kim, HyeRan [7 ]
Lim, Yong Pyo [1 ]
机构
[1] Chungnam Natl Univ, Dept Hort, Daejeon, South Korea
[2] Shenyang Agr Univ, Dept Hort, Shenyang, Peoples R China
[3] Northwest A&F Univ, Inst Soil & Water Conservat, Yangling, Peoples R China
[4] Jawaharlal Nehru Univ, Sch Life Sci, New Delhi, India
[5] TheragenEtex, Theragen Bio Inst, Suwon, South Korea
[6] Natl Inst Hort & Herbal Sci, Vegetable Res Div, Wanju Gun, Jeollabuk Do, South Korea
[7] KRIBB, Plant Syst Engn Res Ctr, Daejeon, South Korea
关键词
GENETIC-LINKAGE MAP; GENOME SEQUENCING PROJECT; ORYZA-SATIVA L; CHLOROPHYLL CONTENT; CELL-PROLIFERATION; ARABIDOPSIS-THALIANA; FLOWERING TIME; CANDIDATE GENE; MARKERS; LOCI;
D O I
10.1007/s00122-017-2914-4
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
QTLs and candidate gene markers associated with leaf morphological and color traits were identified in two immortalized populations of Brassica rapa, which will provide genetic information for marker-assisted breeding. Brassica rapa is an important leafy vegetable consumed worldwide and morphology is a key character for its breeding. To enhance genetic control, quantitative trait loci (QTLs) for leaf color and plant architecture were identified using two immortalized populations with replications of 2 and 4 years. Overall, 158 and 80 QTLs associated with 23 and 14 traits were detected in the DH and RIL populations, respectively. Among them, 23 common robust-QTLs belonging to 12 traits were detected in common loci over the replications. Through comparative analysis, five crucifer genetic blocks corresponding to morphology trait (R, J&U, F and E) and color trait (F, E) were identified in three major linkage groups (A2, A3 and A7). These might be key conserved genomic regions involved with the respective traits. Through synteny analysis with Arabidopsis, 64 candidate genes involved in chlorophyll biosynthesis, cell proliferation and elongation were co-localized within QTL intervals. Among them, SCO3, ABI3, FLU, HCF153, HEMB1, CAB3 were mapped within QTLs for leaf color; and CYCD3;1, CYCB2;4, AN3, ULT1 and ANT were co-localized in QTL regions for leaf size. These robust QTLs and their candidate genes provide useful information for further research into leaf architecture with crop breeding.
引用
收藏
页码:1617 / 1634
页数:18
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