Structural and biochemical advances on the recruitment of the autophagy-initiating ULK and TBK1 complexes by autophagy receptor NDP52

被引:30
作者
Fu, Tao [1 ]
Zhang, Mingfang [1 ]
Zhou, Zixuan [1 ]
Wu, Ping [2 ]
Peng, Chao [2 ]
Wang, Yingli [1 ]
Gong, Xinyu [1 ]
Li, Ying [1 ]
Wang, Yaru [1 ]
Xu, Xiaolong [1 ]
Li, Miao [3 ]
Shen, Liqiang [3 ]
Pan, Lifeng [1 ,3 ]
机构
[1] Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Organ Chem, Ctr Excellence Mol Synth,State Key Lab Bioorgan, Shanghai 200032, Peoples R China
[2] Chinese Acad Sci, Zhangjiang Lab, Shanghai Adv Res Inst, Natl Facil Prot Sci Shanghai, Shanghai 201210, Peoples R China
[3] Univ Chinese Acad Sci, Hangzhou Inst Adv Study, Sch Chem & Mat Sci, 1 Sub Lane Xiangshan, Hangzhou 310024, Peoples R China
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
ENDOPLASMIC-RETICULUM TURNOVER; SELECTIVE AUTOPHAGY; UBIQUITIN RECOGNITION; MOLECULAR-BASIS; MYOSIN-VI; PHOSPHORYLATION; OPTINEURIN; BINDING; FIP200; MECHANISMS;
D O I
10.1126/sciadv.abi6582
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The recruitment of Unc-51-like kinase and TANK-binding kinase 1 complexes is essential for Nuclear dot protein 52-mediated selective autophagy and relies on the specific association of NDP52, RB1-inducible coiled-coil protein 1, and Nak-associated protein 1 (5-azacytidine-induced protein 2, AZI2). However, the underlying molecular mechanism remains elusive. Here, we find that except for the NDP52 SKIP carboxyl homology (SKICH)/RB1CC1 coiledcoil interaction, the LC3-interacting region of NDP52 can directly interact with the RB1CC1 Claw domain, as that of NAP1 FIP200-binding region (FIR). The determined crystal structures of NDP52 SKICH/RB1CC1 complex, NAP1 FIR/RB1CC1 complex, and the related NAP1 FIR/Gamma-aminobutyric acid receptor-associated protein complex not only elucidate the molecular bases underpinning the interactions of RB1CC1 with NDP52 and NAP1 but also reveal that RB1CC1 Claw and Autophagy-related protein 8 family proteins are competitive in binding to NAP1 and NDP52. Overall, our findings provide mechanistic insights into the interactions of NDP52, NAP1 with RB1CC1 and ATG8 family proteins.
引用
收藏
页数:16
相关论文
共 60 条
[1]   PHENIX:: building new software for automated crystallographic structure determination [J].
Adams, PD ;
Grosse-Kunstleve, RW ;
Hung, LW ;
Ioerger, TR ;
McCoy, AJ ;
Moriarty, NW ;
Read, RJ ;
Sacchettini, JC ;
Sauter, NK ;
Terwilliger, TC .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :1948-1954
[2]   TEX264 Is an Endoplasmic Reticulum-Resident ATG8-Interacting Protein Critical for ER Remodeling during Nutrient Stress [J].
An, Heeseon ;
Ordureau, Alban ;
Paulo, Joao A. ;
Shoemaker, Christopher J. ;
Denic, Vladimir ;
Harper, J. Wade .
MOLECULAR CELL, 2019, 74 (05) :891-+
[3]   Intrinsically Disordered Protein TEX264 Mediates ER-phagy [J].
Chino, Haruka ;
Hatta, Tomohisa ;
Natsume, Tohru ;
Mizushima, Noboru .
MOLECULAR CELL, 2019, 74 (05) :909-+
[4]   MolProbity: all-atom contacts and structure validation for proteins and nucleic acids [J].
Davis, Ian W. ;
Leaver-Fay, Andrew ;
Chen, Vincent B. ;
Block, Jeremy N. ;
Kapral, Gary J. ;
Wang, Xueyi ;
Murray, Laura W. ;
Arendall, W. Bryan, III ;
Snoeyink, Jack ;
Richardson, Jane S. ;
Richardson, David C. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W375-W383
[5]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[6]   Mechanistic insights into selective autophagy pathways: lessons from yeast [J].
Farre, Jean-Claude ;
Subramani, Suresh .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2016, 17 (09) :537-552
[7]   Mechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1 [J].
Fu, Tao ;
Liu, Jianping ;
Wang, Yingli ;
Xie, Xingqiao ;
Hu, Shichen ;
Pan, Lifeng .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (50) :E11651-E11660
[8]   Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery [J].
Fumagalli, Fiorenza ;
Noack, Julia ;
Bergmann, Timothy J. ;
Presmanes, Eduardo Cebollero ;
Pisoni, Giorgia Brambilla ;
Fasana, Elisa ;
Fregno, Ilaria ;
Galli, Carmela ;
Loi, Marisa ;
Solda, Tatiana ;
D'Antuono, Rocco ;
Raimondi, Andrea ;
Jung, Martin ;
Melnyk, Armin ;
Schorr, Stefan ;
Schreiber, Anne ;
Simonelli, Luca ;
Varani, Luca ;
Wilson-Zbinden, Caroline ;
Zerbe, Oliver ;
Hofmann, Kay ;
Peter, Matthias ;
Quadroni, Manfredo ;
Zimmermann, Richard ;
Molinari, Maurizio .
NATURE CELL BIOLOGY, 2016, 18 (11) :1173-+
[9]   Interaction between FIP200 and ATG16L1 distinguishes ULK1 complex-dependent and -independent autophagy [J].
Gammoh, Noor ;
Florey, Oliver ;
Overholtzer, Michael ;
Jiang, Xuejun .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 20 (02) :144-149
[10]   Selective autophagy degrades DICER and AGO2 and regulates miRNA activity [J].
Gibbings, Derrick ;
Mostowy, Serge ;
Jay, Florence ;
Schwab, Yannick ;
Cossart, Pascale ;
Voinnet, Olivier .
NATURE CELL BIOLOGY, 2012, 14 (12) :1314-+