A Pan-Cancer Analysis of the Oncogenic Role of BCL7B: A Potential Biomarker for Prognosis and Immunotherapy

被引:3
作者
Yang, Dinglong [1 ]
Li, Hetong [1 ]
Chen, Yujing [2 ]
Li, Chunjiang [3 ]
Ren, Weiping [3 ]
Huang, Yongbo [3 ]
机构
[1] Shanxi Med Univ, Clin Med Coll 2, Taiyuan, Peoples R China
[2] Xi An Jiao Tong Univ, Sch Publ Hlth, Xian, Peoples R China
[3] Second Hosp Shanxi Med Univ, Dept Orthoped, Taiyuan, Peoples R China
关键词
BCL7B; TCGA; pan-cancer; prognosis; immune infiltration; bioinformatics; PD-1; BLOCKADE; CELLS; LANDSCAPE; LYMPHOMA; GENES; EXPRESSION; CHROMATIN; IMMUNITY;
D O I
10.3389/fgene.2022.906174
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Previous studies have partly explored the role of B-cell CLL/lymphoma 7 protein family member B (BCL7B) in tumorigenesis and development. However, the prognosis and immunoregulatory value of BCL7B in pan-cancer patients remains unclear.Methods: Through The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases, the distinct expression of BCL7B gene in 33 tumors and adjacent normal tissues was analyzed. The Kaplan-Meier method (univariate Cox regression analysis and Kaplan-Meier curve) was used to identify the cancer types whose BCL7B gene expression was related to prognosis. The receiver operating characteristic (ROC) curve was used to elucidate the diagnosis value of BCL7B gene. Spearman's rank correlation coefficient was used to explore the relationship between BCL7B gene expression and immune cell infiltration, immune checkpoints, DNA methylation, DNA repair genes, immune-activating genes, immune-suppressing genes, immune subtypes, tumor mutation burden (TMB), and microsatellite instability (MSI). The Wilcoxon rank sum test and Kruskal-Wallis test were used to compare the expression of BCL7B gene in tumor tissues with different clinicopathological features. Gene set enrichment analysis (GSEA) was conducted to identify the tumor-related pathways in pan-cancer. The Human Protein Atlas (HPA) database was used to verify the BCL7B gene expression at the protein level.Results: High expression of BCL7B was associated with an inferior prognosis in glioblastoma multiforme (GBM), glioma (GBMLGG), kidney chromophobe (KICH), brain lower grade glioma (LGG), oral squamous cell carcinoma (OSCC), rectum adenocarcinoma (READ), and uveal melanoma (UVM). Low expression of BCL7B was associated with a poor prognosis in kidney renal clear cell carcinoma (KIRC), kidney renal papillary cell carcinoma (KIRP), skin cutaneous melanoma (SKCM), thyroid carcinoma (THCA), and sarcoma (SARC). The BCL7B gene expression had varying degrees of correlation with 24 immune cell subsets in 37 tumor environments such as adrenocortical carcinoma (ACC) and bladder urothelial carcinoma (BCLA). Spearman's rank correlation coefficient showed that BCL7B gene expression had different degrees of correlation with 47 immune checkpoints, 46 immune-activating genes, 24 immune-suppressing genes, 5 DNA repair genes, and DNA methylation, TMB, and MSI in 39 tumors. GSEA suggested that BCL7B was notably associated with cancer-related and immune-related pathways.Conclusion: In summary, BCL7B gene has a high diagnostic and prognostic value in pan-cancer and is related to the infiltration of 24 immune cell subsets in pan-cancer.
引用
收藏
页数:16
相关论文
共 56 条
[1]   TMB or not TMB as a biomarker: That is the question [J].
Addeo, Alfredo ;
Friedlaender, Alex ;
Banna, Giuseppe L. ;
Weiss, Glen J. .
CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY, 2021, 163
[2]   Role of adenomatous polyposis coli (APC) gene mutations in the pathogenesis of colorectal cancer; current status and perspectives [J].
Aghabozorgi, Amirsaeed Sabeti ;
Bahreyni, Amirhossein ;
Soleimani, Atena ;
Bahrami, Afsane ;
Khazaei, Majid ;
Ferns, Gordon A. ;
Avan, Amir ;
Hassanian, Seyed Mahdi .
BIOCHIMIE, 2019, 157 :64-71
[3]   PD1 signal transduction pathways in T cells [J].
Arasanz, Hugo ;
Gato-Canas, Maria ;
Zuazo, Miren ;
Ibanez-Vea, Maria ;
Breckpot, Karine ;
Kochan, Grazyna ;
Escors, David .
ONCOTARGET, 2017, 8 (31) :51936-51945
[4]   Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer [J].
Bindea, Gabriela ;
Mlecnik, Bernhard ;
Tosolini, Marie ;
Kirilovsky, Amos ;
Waldner, Maximilian ;
Obenauf, Anna C. ;
Angell, Helen ;
Fredriksen, Tessa ;
Lafontaine, Lucie ;
Berger, Anne ;
Bruneval, Patrick ;
Fridman, Wolf Herman ;
Becker, Christoph ;
Pages, Franck ;
Speicher, Michael R. ;
Trajanoski, Zlatko ;
Galon, Jerome .
IMMUNITY, 2013, 39 (04) :782-795
[5]   Cancer Epigenetics, Tumor Immunity, and Immunotherapy [J].
Cao, Jian ;
Yan, Qin .
TRENDS IN CANCER, 2020, 6 (07) :580-592
[6]   Poised Chromatin at the ZEB1 Promoter Enables Breast Cancer Cell Plasticity and Enhances Tumorigenicity [J].
Chaffer, Christine L. ;
Marjanovic, Nemanja D. ;
Lee, Tony ;
Bell, George ;
Kleer, Celina G. ;
Reinhardt, Ferenc ;
D'Alessio, Ana C. ;
Young, Richard A. ;
Weinberg, Robert A. .
CELL, 2013, 154 (01) :61-74
[7]   Prognostic role of immune infiltrates in breast ductal carcinoma in situ [J].
Chen, Xiao-Yang ;
Yeong, Joe ;
Thike, Aye Aye ;
Bay, Boon Huat ;
Tan, Puay Hoon .
BREAST CANCER RESEARCH AND TREATMENT, 2019, 177 (01) :17-27
[8]   Suppressors of cytokine signaling: Potential immune checkpoint molecules for cancer immunotherapy [J].
Chikuma, Shunsuke ;
Kanamori, Mitsuhiro ;
Mise-Omata, Setsuko ;
Yoshimura, Akihiko .
CANCER SCIENCE, 2017, 108 (04) :574-580
[9]   MiR-501-3p promotes osteosarcoma cell proliferation, migration and invasion by targeting BCL7A [J].
Dai, Jinliang ;
Lu, Lin ;
Kang, Lixin ;
Zhang, Jian .
HUMAN CELL, 2021, 34 (02) :624-633
[10]   Harnessing innate immunity in cancer therapy [J].
Demaria, Olivier ;
Cornen, Stephanie ;
Daeron, Marc ;
Morel, Yannis ;
Medzhitov, Ruslan ;
Vivier, Eric .
NATURE, 2019, 574 (7776) :45-56