Key message A novel QTL (qSCN-PL10) for SCN resistance and related candidate genes were identified in the soybean variety Pingliang xiaoheidou, and plant basal immunity seems to contribute to the SCN resistance. Soybean cyst nematode (SCN, Heterodera glycines Ichinohe) is one of the most devastating soybean pests worldwide. The development of host plant resistance represents an effective strategy to control SCN. However, owing to the lack of diversity of resistance genes in soybean varieties, further investigation is necessary to identify new SCN resistance genes. By analyzing the resistance phenotypes of soybean variety Pingliang xiaoheidou (Pingliang, ZDD 11047), we found that it exhibited the different resistance phenotypes from PI 88788 and Peking varieties. Because Pingliang variety contains the Rhg1-a (low copy) haplotype and lacks the resistant Rhg4 haplotype, novel quantitative trait locus might account for their SCN resistance. After sequencing parental lines (Magellan and Pingliang) and 200 F-2:3 progenies, a high-density genetic map was constructed using the specific length amplified fragment sequencing method and qSCN-PL10 was identified as a novel locus for SCN resistance. Candidate genes were predicted by RNA sequencing (RNA-seq) in the qSCN-PL10 locus region. The RNA-seq analysis performed also indicated that plant basal immunity plays an important role in the resistance of Pingliang to SCN. These results lay a foundation for the use of marker-assisted breeding to enhance the resistance to SCN.
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Cook, David E.
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Lee, Tong Geon
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Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Lee, Tong Geon
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Guo, Xiaoli
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Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Guo, Xiaoli
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Melito, Sara
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Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Melito, Sara
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Wang, Kai
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Univ Wisconsin, Dept Hort, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Wang, Kai
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Bayless, Adam M.
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h-index: 0
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Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Bayless, Adam M.
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Wang, Jianping
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h-index: 0
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Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Wang, Jianping
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Hughes, Teresa J.
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Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Hughes, Teresa J.
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Willis, David K.
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机构:
Univ Wisconsin, USDA ARS, Madison, WI 53706 USA
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Willis, David K.
;
Clemente, Thomas E.
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Univ Nebraska, Dept Agron & Hort, Lincoln, NE 68588 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Clemente, Thomas E.
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Diers, Brian W.
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h-index: 0
机构:
Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Diers, Brian W.
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Jiang, Jiming
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Univ Wisconsin, Dept Hort, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Jiang, Jiming
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Hudson, Matthew E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA
Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Hudson, Matthew E.
;
Bent, Andrew F.
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h-index: 0
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Cook, David E.
;
Lee, Tong Geon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Lee, Tong Geon
;
Guo, Xiaoli
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Guo, Xiaoli
;
Melito, Sara
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Melito, Sara
;
Wang, Kai
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Hort, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Wang, Kai
;
Bayless, Adam M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Bayless, Adam M.
;
Wang, Jianping
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Wang, Jianping
;
Hughes, Teresa J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Hughes, Teresa J.
;
Willis, David K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, USDA ARS, Madison, WI 53706 USA
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Willis, David K.
;
Clemente, Thomas E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Nebraska, Dept Agron & Hort, Lincoln, NE 68588 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Clemente, Thomas E.
;
Diers, Brian W.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Diers, Brian W.
;
Jiang, Jiming
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Hort, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Jiang, Jiming
;
Hudson, Matthew E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA
Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA
Hudson, Matthew E.
;
Bent, Andrew F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Plant Pathol, Madison, WI 53706 USAUniv Wisconsin, Dept Plant Pathol, Madison, WI 53706 USA