Exact theory of kinkable elastic polymers

被引:156
作者
Wiggins, PA [1 ]
Phillips, R
Nelson, PC
机构
[1] CALTECH, Div Phys Math & Astron, Pasadena, CA 91125 USA
[2] CALTECH, Div Engn & Appl Sci, Pasadena, CA 91125 USA
[3] CALTECH, Kavli Nanosci Inst, Pasadena, CA 91125 USA
[4] Univ Penn, Dept Phys & Astron, Philadelphia, PA 19146 USA
来源
PHYSICAL REVIEW E | 2005年 / 71卷 / 02期
关键词
D O I
10.1103/PhysRevE.71.021909
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
The importance of nonlinearities in material constitutive relations has long been appreciated in the continuum mechanics of macroscopic rods. Although the moment (torque) response to bending is almost universally linear for small deflection angles, many rod systems exhibit a high-curvature softening. The signature behavior of these rod systems is a kinking transition in which the bending is localized. Recent DNA cyclization experiments by Cloutier and Widom have offered evidence that the linear-elastic bending theory fails to describe the high-curvature mechanics of DNA. Motivated by this recent experimental work, we develop a simple and exact theory of the statistical mechanics of linear-elastic polymer chains that can undergo a kinking transition. We characterize the kinking behavior with a single parameter and show that the resulting theory reproduces both the low-curvature linear-elastic behavior which is already well described by the wormlike chain model, as well as the high-curvature softening observed in recent cyclization experiments.
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页数:19
相关论文
共 46 条
[1]   Elasticity theory of the B-DNA to S-DNA transition [J].
Ahsan, A ;
Rudnick, J ;
Bruinsma, R .
BIOPHYSICAL JOURNAL, 1998, 74 (01) :132-137
[2]  
[Anonymous], 1997, HELICAL WORMLIKE CHA
[3]  
Arfken G.B., 2005, Mathematical Methods for Physicists, V6th
[4]   PHYSICAL-PROPERTIES OF DNA INVIVO AS PROBED BY THE LENGTH DEPENDENCE OF THE LAC OPERATOR LOOPING PROCESS [J].
BELLOMY, GR ;
MOSSING, MC ;
RECORD, MT .
BIOCHEMISTRY, 1988, 27 (11) :3900-3906
[5]   Modelling base pair opening: the role of helical twist [J].
Bernet, J ;
Zakrzewska, K ;
Lavery, R .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 1997, 398 :473-482
[6]   Estimating the persistence length of a worm-like chain molecule from force-extension measurements [J].
Bouchiat, C ;
Wang, MD ;
Allemand, JF ;
Strick, T ;
Block, SM ;
Croquette, V .
BIOPHYSICAL JOURNAL, 1999, 76 (01) :409-413
[7]   Single-molecule studies of DNA mechanics [J].
Bustamante, C ;
Smith, SB ;
Liphardt, J ;
Smith, D .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2000, 10 (03) :279-285
[8]  
Cizeau P, 1997, BIOPOLYMERS, V42, P383, DOI 10.1002/(SICI)1097-0282(19971005)42:4<383::AID-BIP1>3.3.CO
[9]  
2-N
[10]   Spontaneous sharp bending of double-stranded DNA [J].
Cloutier, TE ;
Widom, J .
MOLECULAR CELL, 2004, 14 (03) :355-362