The conundrum in enzymatic reactions related to biosynthesis of D-amino acids in bacteria

被引:4
作者
Pollegioni, Loredano [1 ]
Molla, Gianluca [1 ]
机构
[1] Univ Insubria, Dipartimento Biotecnol & Sci Vita, Prot Factory 2 0, Varese, Italy
关键词
D-glutamate; enzyme promiscuity; peptidoglycan; PLP-containing enzymes; CELL-WALL; ELUCIDATION;
D O I
10.1111/febs.16475
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
D-Amino acids (D-AAs) are key components of the peptidoglycan matrix in bacterial cells. Various bacterial species are known to produce D-AAs by using different enzymes, such as highly specific and broad-spectrum racemases. Miyamoto et al. studied the biosynthesis of D-glutamate in the hyperthermophile and anaerobic Gram-negative bacterium, Thermotoga maritima, which does not possess a broad-spectrum racemase. The investigated TM0831 enzyme catalyzes both a D-amino acid aminotransferase reaction producing D-glutamate and an amino acid racemase activity aimed at generating D-aspartate and D-glutamate from the corresponding L-enantiomers. TM0831 represents an example of natural molecular evolution process favoring the enzyme versatility.
引用
收藏
页码:5895 / 5898
页数:4
相关论文
共 16 条
[1]   New Insights Into the Mechanisms and Biological Roles of D-Amino Acids in Complex Eco-Systems [J].
Aliashkevich, Alena ;
Alvarez, Laura ;
Cava, Felipe .
FRONTIERS IN MICROBIOLOGY, 2018, 9
[2]   The Elucidation of the Structure of Thermotoga maritima Peptidoglycan Reveals Two Novel Types of Cross-link [J].
Boniface, Audrey ;
Parquet, Claudine ;
Arthur, Michel ;
Mengin-Lecreulx, Dominique ;
Blanot, Didier .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (33) :21856-21862
[3]   Disturbance of the bacterial cell wall specifically interferes with biofilm formation [J].
Bucher, Tabitha ;
Oppenheimer-Shaanan, Yaara ;
Savidor, Alon ;
Bloom-Ackermann, Zohar ;
Kolodkin-Gal, Ilana .
ENVIRONMENTAL MICROBIOLOGY REPORTS, 2015, 7 (06) :990-1004
[4]   Distinct pathways for modification of the bacterial cell wall by non-canonical D-amino acids [J].
Cava, Felipe ;
de Pedro, Miguel A. ;
Lam, Hubert ;
Davis, Brigid M. ;
Waldor, Matthew K. .
EMBO JOURNAL, 2011, 30 (16) :3442-3453
[5]   Environmental roles of microbial amino acid racemases [J].
Hernandez, Sara B. ;
Cava, Felipe .
ENVIRONMENTAL MICROBIOLOGY, 2016, 18 (06) :1673-1685
[6]   Enzyme promiscuity: evolutionary and mechanistic aspects [J].
Khersonsky, Olga ;
Roodveldt, Cintia ;
Tawfik, Dan S. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2006, 10 (05) :498-508
[7]   D-Amino Acids Govern Stationary Phase Cell Wall Remodeling in Bacteria [J].
Lam, Hubert ;
Oh, Dong-Chan ;
Cava, Felipe ;
Takacs, Constantin N. ;
Clardy, Jon ;
de Pedro, Miguel A. ;
Waldor, Matthew K. .
SCIENCE, 2009, 325 (5947) :1552-1555
[8]   Functional and structural characterization of thermostable D-amino acid aminotransferases from Geobacillus spp. [J].
Lee, SG ;
Hong, SP ;
Song, JJ ;
Kim, SJ ;
Kwak, MS ;
Sung, MH .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (02) :1588-1594
[9]   D-amino acids in foods [J].
Marcone, Giorgia Letizia ;
Rosini, Elena ;
Crespi, Elena ;
Pollegioni, Loredano .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2020, 104 (02) :555-574
[10]   Identification of a novel d-amino acid aminotransferase involved in d-glutamate biosynthetic pathways in the hyperthermophile Thermotoga maritima [J].
Miyamoto, Tetsuya ;
Moriya, Toshiyuki ;
Katane, Masumi ;
Saitoh, Yasuaki ;
Sekine, Masae ;
Sakai-Kato, Kumiko ;
Oshima, Tairo ;
Homma, Hiroshi .
FEBS JOURNAL, 2022, 289 (19) :5933-5946