共 53 条
Uncertainty Distribution of Crystal Structure Prediction
被引:6
作者:

Abramov, Yuriy A.
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机构:
XtalPi Inc, Cambridge, MA 02142 USA
Univ N Carolina, Eshelman Sch Pharm, Chapel Hill, NC 27515 USA Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China

Li, Bochen
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h-index: 0
机构:
Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China

Chang, Chao
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h-index: 0
机构:
Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China

Zeng, Qun
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h-index: 0
机构:
Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China

Sun, Guangxu
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h-index: 0
机构:
Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China

Gobbo, Gianpaolo
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h-index: 0
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XtalPi Inc, Cambridge, MA 02142 USA Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China
机构:
[1] Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen, Peoples R China
[2] XtalPi Inc, Cambridge, MA 02142 USA
[3] Univ N Carolina, Eshelman Sch Pharm, Chapel Hill, NC 27515 USA
关键词:
MOLECULAR-CRYSTALS;
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D O I:
10.1021/acs.cgd.1c00527
中图分类号:
O6 [化学];
学科分类号:
0703 ;
摘要:
The modern crystal structure prediction (CSP) technologies have proven to be accurate enough to provide a valuable support for a stable form selection in the pharmaceutical industry. We demonstrate that successful applications of the CSP predictions, in part, may be accounted for by favorable uncertainty distribution with the smallest absolute errors in the low relative crystal energy region. Such behavior is dictated by the lowest contribution of the systematic scaling error of dispersion-corrected density functional theory (DFT-D) approaches in this region. These considerations are validated by benchmarking studies of selected popular DFT-D approaches relative to post-Hartree-Fock (post-HF) calculations for representative molecular dimeric configurations in the virtual crystalline states of four pharmaceutical compounds. In addition, discussed are uncertainty distributions of DFT-D predictions of relative energies of eight ROY and five oxalyl dihydrazide (ODH) polymorphs relative to MP2D/HMBI and CCSD(T)/HMBI predictions, respectively.
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页码:5496 / 5502
页数:7
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共 53 条
[41]
Understanding the role of vibrations, exact exchange, and many-body van der Waals interactions in the cohesive properties of molecular crystals
[J].
Reilly, Anthony M.
;
Tkatchenko, Alexandre
.
JOURNAL OF CHEMICAL PHYSICS,
2013, 139 (02)

Reilly, Anthony M.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany

Tkatchenko, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany
[42]
Seamless and Accurate Modeling of Organic Molecular Materials
[J].
Reilly, Anthony M.
;
Tkatchenko, Alexandre
.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS,
2013, 4 (06)
:1028-1033

Reilly, Anthony M.
论文数: 0 引用数: 0
h-index: 0
机构:
Fritz Haber Inst Max Planck Gesell, D-14195 Berlin, Germany Fritz Haber Inst Max Planck Gesell, D-14195 Berlin, Germany

Tkatchenko, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构:
Fritz Haber Inst Max Planck Gesell, D-14195 Berlin, Germany Fritz Haber Inst Max Planck Gesell, D-14195 Berlin, Germany
[43]
Accurate Noncovalent Interactions via Dispersion-Corrected Second-Order Moller-Plesset Perturbation Theory
[J].
Rezac, Jan
;
Greenwell, Chandler
;
Beran, Gregory J. O.
.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION,
2018, 14 (09)
:4711-4721

Rezac, Jan
论文数: 0 引用数: 0
h-index: 0
机构:
Czech Acad Sci, Inst Organ Chem & Biochem, Prague 16610, Czech Republic Czech Acad Sci, Inst Organ Chem & Biochem, Prague 16610, Czech Republic

Greenwell, Chandler
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA Czech Acad Sci, Inst Organ Chem & Biochem, Prague 16610, Czech Republic

Beran, Gregory J. O.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA Czech Acad Sci, Inst Organ Chem & Biochem, Prague 16610, Czech Republic
[44]
S66: A Well-balanced Database of Benchmark Interaction Energies Relevant to Biomolecular Structures
[J].
Rezac, Jan
;
Riley, Kevin E.
;
Hobza, Pavel
.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION,
2011, 7 (08)
:2427-2438

Rezac, Jan
论文数: 0 引用数: 0
h-index: 0
机构:
Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague, Czech Republic
Ctr Biomol & Complex Mol Syst, Prague 16610, Czech Republic Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague, Czech Republic

Riley, Kevin E.
论文数: 0 引用数: 0
h-index: 0
机构:
Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague, Czech Republic
Ctr Biomol & Complex Mol Syst, Prague 16610, Czech Republic Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague, Czech Republic

Hobza, Pavel
论文数: 0 引用数: 0
h-index: 0
机构:
Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague, Czech Republic
Ctr Biomol & Complex Mol Syst, Prague 16610, Czech Republic
Palacky Univ, Reg Ctr Adv Technol & Mat, Dept Phys Chem, Olomouc 77146, Czech Republic Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague, Czech Republic
[45]
Current State-of-the-art In-house and Cloud-Based Applications of Virtual Polymorph Screening of Pharmaceutical Compounds: A Challenging Case of AZD1305
[J].
Sun, GuangXu
;
Liu, Xuetao
;
Abramov, Yuriy A.
;
Lill, Sten O. Nilsson
;
Chang, Chao
;
Burger, Virginia
;
Broo, Anders
.
CRYSTAL GROWTH & DESIGN,
2021, 21 (04)
:1972-1983

Sun, GuangXu
论文数: 0 引用数: 0
h-index: 0
机构:
Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China
Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen 518100, Peoples R China Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China

Liu, Xuetao
论文数: 0 引用数: 0
h-index: 0
机构:
Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China
Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen 518100, Peoples R China Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China

Abramov, Yuriy A.
论文数: 0 引用数: 0
h-index: 0
机构:
XtalPi Inc, Cambridge, MA 02142 USA
Univ North Carolina, Eshelman Sch Pharm, Chapel Hill, NC 27599 USA Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China

Lill, Sten O. Nilsson
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Early Prod Dev & Mfg Pharmaceut Sci, SE-43183 Molndal, Sweden Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China

Chang, Chao
论文数: 0 引用数: 0
h-index: 0
机构:
Shenzhen Jingtai Technol Co Ltd, XtalPi Inc, Shenzhen 518100, Peoples R China Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China

Burger, Virginia
论文数: 0 引用数: 0
h-index: 0
机构:
XtalPi Inc, Cambridge, MA 02142 USA Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China

Broo, Anders
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Data Sci & Modelling Pharmaceut Sci, SE-43183 Molndal, Sweden Peking Univ, Shenzhen Grad Sch, Lab Computat Chem & Drug Design, State Key Lab Chem Oncoge, Shenzhen 518055, Peoples R China
[46]
Virtual Coformer Screening by Crystal Structure Predictions: Crucial Role of Crystallinity in Pharmaceutical Cocrystallization
[J].
Sun, Guangxu
;
Jin, Yingdi
;
Li, Sizhu
;
Yang, Zhuocen
;
Shi, Baimei
;
Chang, Chao
;
Abramov, Yuriy A.
.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS,
2020, 11 (20)
:8832-8838

Sun, Guangxu
论文数: 0 引用数: 0
h-index: 0
机构:
XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China

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h-index: 0
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XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China

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论文数: 0 引用数: 0
h-index: 0
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XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China

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论文数: 0 引用数: 0
h-index: 0
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XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China

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论文数: 0 引用数: 0
h-index: 0
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论文数: 0 引用数: 0
h-index: 0
机构:
XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China

Abramov, Yuriy A.
论文数: 0 引用数: 0
h-index: 0
机构:
XtalPi Inc, Cambridge, MA 02142 USA
Univ N Carolina, Eshelman Sch Pharm, Chapel Hill, NC 27599 USA XtalPi Inc, Shenzhen Jingtai Technol Co Ltd, Shenzhen 518100, Peoples R China
[47]
Evaluating the Energetic Driving Force for Cocrystal Formation
[J].
Taylor, Christopher R.
;
Day, Graeme M.
.
CRYSTAL GROWTH & DESIGN,
2018, 18 (02)
:892-904

Taylor, Christopher R.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Southampton, Sch Chem, Southampton SO17 1BJ, Hants, England Univ Southampton, Sch Chem, Southampton SO17 1BJ, Hants, England

Day, Graeme M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Southampton, Sch Chem, Southampton SO17 1BJ, Hants, England Univ Southampton, Sch Chem, Southampton SO17 1BJ, Hants, England
[48]
Accurate Lattice Energies for Molecular Crystals from Experimental Crystal Structures
[J].
Thomas, Sajesh P.
;
Spackman, Peter R.
;
Jayatilaka, Dylan
;
Spackman, Mark A.
.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION,
2018, 14 (03)
:1614-1623

Thomas, Sajesh P.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia
Aarhus Univ, Dept Chem, Ctr Mat Crystallog, DK-8000 Aarhus C, Denmark Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia

Spackman, Peter R.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia

Jayatilaka, Dylan
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia

Spackman, Mark A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia Univ Western Australia, Sch Mol Sci, Perth, WA 6009, Australia
[49]
Which conformations make stable crystal structures? Mapping crystalline molecular geometries to the conformational energy landscape
[J].
Thompson, Hugh P. G.
;
Day, Graeme M.
.
CHEMICAL SCIENCE,
2014, 5 (08)
:3173-3182

Thompson, Hugh P. G.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England

Day, Graeme M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Southampton, Sch Chem, Southampton SO17 1BJ, Hants, England Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England
[50]
Accurate and Efficient Method for Many-Body van der Waals Interactions
[J].
Tkatchenko, Alexandre
;
DiStasio, Robert A., Jr.
;
Car, Roberto
;
Scheffler, Matthias
.
PHYSICAL REVIEW LETTERS,
2012, 108 (23)

Tkatchenko, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany

DiStasio, Robert A., Jr.
论文数: 0 引用数: 0
h-index: 0
机构:
Princeton Univ, Dept Chem, Princeton, NJ 08544 USA Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany

论文数: 引用数:
h-index:
机构:

Scheffler, Matthias
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany Max Planck Gesell, Fritz Haber Inst, D-14195 Berlin, Germany