Pathological role of a point mutation (T315I) in BCR-ABL1 proteinA computational insight

被引:104
作者
Rajendran, Vidya [1 ]
Gopalakrishnan, Chandrasekhar [2 ]
Sethumadhavan, Rao [1 ]
机构
[1] Vellore Inst Technol Univ, Computat Biol Lab, Dept Biotechnol, Vellore 632014, Tamil Nadu, India
[2] Univ Calgary, Dept Biochem & Mol Biol, Cumming Sch Med, Calgary, AB, Canada
关键词
BCR-ABL protein; dynamics simulation; flexibility; mutation; CHRONIC MYELOID-LEUKEMIA; CHRONIC MYELOGENOUS LEUKEMIA; KINASE DOMAIN MUTATIONS; ABL TYROSINE KINASE; BCR-ABL; PHILADELPHIA-CHROMOSOME; MOLECULAR-DYNAMICS; C-ABL; INHIBITOR; NILOTINIB;
D O I
10.1002/jcb.26257
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
BCR-ABL protein is one of the most potent target to treat chronic myeloid leukemia (CML). Apart from other mutations, T315I is especially challenging as it confers resistance to all first- and second-generation tyrosine kinase inhibitors. So, a thorough study of altered behavior upon mutation is crucially needed. To understand the resistance mechanism of mutant BCR-ABL protein, we organized a long-term molecular dynamics simulation (500ns) and performed the detailed comparative conformational analysis. We found that due to mutation at 315th position (threonine to isoleucine), original structures deviated from normal, and attained a flexible conformation. Our observations pave a clear path toward designing new inhibitors against resistant BCR-ABL1 protein and suggest a strategy where additional flexibility governed by mutation could be given an appropriate consideration.
引用
收藏
页码:918 / 925
页数:8
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[31]   MK-0457, an Aurora kinase and BCR–ABL inhibitor, is active in patients with BCR–ABL T315I leukemia [J].
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A Nagler ;
A Hochhaus ;
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M Talpaz ;
J Clark ;
P Watson ;
A Xiao ;
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