Complete mitochondrial genome of a tropical sea cucumber, Stichopus chloronotus

被引：2
|
作者：
Chen, Xiaoying [1 ]
Sun, Yuping [1 ]
Zhao, Hongxia [1 ]
Hu, Junru [1 ]
Chen, Bing [1 ]
Li, Huo [2 ]
Huang, Wen [1 ,2 ]
机构：
[1] Guangdong Acad Agr Sci, Key Lab Anim Nutr & Feed Sci South China, Inst Anim Sci,Lab Aquat Sci, Minist Agr Rural Affairs,Guangdong Key Lab Anim B, Guangzhou, Guangdong, Peoples R China
[2] Guangdong Jinyang Biotechnol Co Ltd, Doctoral Workstn Guangdong Prov, Guangdong Prov Engn & Technol Res Ctr, Maoming, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 10期
关键词：
Mitochondrial genome; Stichopus chloronotus; phylogenetic analysis;
D O I：
10.1080/23802359.2021.1967218
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
In this study, we report the complete mitochondrial genome of Stichopus chloronotus. The mitogenome was 16,247 base pairs (58.55% A + T content) in length, comprising a total of 37 genes, including 13 protein-coding genes, 22 transfer RNA genes and 2 ribosomal RNA genes. To resolve the phylogenetic position of S. chloronotus, we analyzed all mitochondrial protein-coding genes from 27 species within the Echinodermata. The results showed that S. chloronotus belonged to the family Stichopodidae and was more closely related to tropical Stichopus species (S. horrens and S. monotuberculatus) than to other species. Our results will be useful for evolutionary analysis of sea cucumber species.
引用
收藏
页码：2788 / 2790
页数：3
相关论文
共 50 条
  • [1] First report of the development of microsatellite markers for a tropical sea cucumber (Stichopus chloronotus)
    Coralie Taquet
    Satoshi Nagai
    Nina Yasuda
    Kazuo Nadaoka
    Conservation Genetics Resources, 2011, 3 : 201 - 203
  • [2] The complete mitochondrial genome of sea cucumber Stichopus monotuberculatus (aspidochirotida: Stichopodidae)
    Zhong, Shengping
    Liu, Yonghong
    Zhao, Yanfei
    Huang, Guoqiang
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3305 - 3306
  • [3] First report of the development of microsatellite markers for a tropical sea cucumber (Stichopus chloronotus)
    Taquet, Coralie
    Nagai, Satoshi
    Yasuda, Nina
    Nadaoka, Kazuo
    CONSERVATION GENETICS RESOURCES, 2011, 3 (02) : 201 - 203
  • [4] Triterpene Saponins from the Sea Cucumber Stichopus chloronotus
    Nguyen Phuong Thao
    Bui Thi Thuy Luyen
    Le Thi Vien
    Bui Huu Tai
    Le Duc Dat
    Nguyen Xuan Cuong
    Nguyen Hoai Nam
    Phan Van Kiem
    Chau Van Minh
    Kim, Young Ho
    NATURAL PRODUCT COMMUNICATIONS, 2014, 9 (05) : 615 - 618
  • [5] The complete mitochondrial genome of a tropical sea cucumber, Holothuria leucospilota
    Cheng, Chuhang
    Yu, Zonghe
    Ren, Chunhua
    Jiang, Xiao
    Zhang, Xin
    Wu, Xiaofen
    Huang, Wen
    Hu, Chaoqun
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3118 - 3119
  • [6] Complete mitochondrial genome of the sea cucumber Stichopus sp and its application in the identification of this species
    Fan, Sigang
    Hu, Chaoqun
    Zhang, Lvping
    Sun, Hongyan
    Wen, Jing
    Luo, Peng
    AQUACULTURE RESEARCH, 2012, 43 (09) : 1306 - 1316
  • [7] Fatty acid compositions in local sea cucumber, Stichopus chloronotus, for wound healing
    Fredalina, BD
    Ridzwan, BH
    Abidin, AAZ
    Kaswandi, MA
    Zaiton, H
    Zali, I
    Kittakoop, P
    Jais, AMM
    GENERAL PHARMACOLOGY, 1999, 33 (04): : 337 - 340
  • [8] Characterization and phylogenetic analysis of the complete mitochondrial genome of a tropical sea cucumber,Holothuria fuscocinerea
    Cheng, Chuhang
    Wu, Feifei
    Ren, Chunhua
    Jiang, Xiao
    Wu, Xiaofen
    Huang, Wen
    Hu, Chaoqun
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2677 - 2678
  • [9] Chromosome-level genome assembly and annotation of the tropical sea cucumber Stichopus monotuberculatus
    Chen, Ting
    Yang, Yun
    Wang, Xuan
    Qin, Zhou
    Xie, Zhenyu
    Fan, Dingding
    Ren, Chunhua
    Sun, Hongyan
    Luo, Peng
    Jiang, Xiao
    Long, Hao
    Chen, Chang
    Pan, Wenjie
    E., Zixuan
    Huang, Jiasheng
    Huang, Qianying
    Xu, Jianfeng
    Zhang, Zepeng
    Cheng, Chuhang
    Yu, Suzhong
    Wang, Yanhong
    Jiang, Fajun
    Yan, Aifen
    Hu, Chaoqun
    SCIENTIFIC DATA, 2024, 11 (01)
  • [10] Structure characterization, antioxidant and immunoregulatory properties of a novel fucoidan from the sea cucumber Stichopus chloronotus
    Li, Qiang
    Jiang, Shuxin
    Shi, Weiwei
    Qi, Xiaohui
    Song, Weiguo
    Mou, Jiaojiao
    Yang, Jie
    CARBOHYDRATE POLYMERS, 2020, 231
12345