Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils

Amyloid-beta (A beta) is a 39-42 residue protein produced by the cleavage of the amyloid precursor protein (APP), which subsequently aggregates to form cross-beta amyloid fibrils that are a hallmark of Alzheimer's disease (AD). The most prominent forms of A beta are A beta(1-40) and A beta(l-42), which differ by two amino acids (I and A) at the C-terminus. However, A beta(42) is more neurotoxic and essential to the etiology of AD. Here, we present an atomic resolution structure of a monornorphic form of A beta(M01-42) amyloid fibrils derived from over 500 C-13-C-13, C-13-N-15 distance and backbone angle structural constraints obtained from high field magic angle spinning NMR spectra. The structure (PDB ID: 5KK3) shows that the fibril core consists of a dimer of A beta(42) molecules, each containing four beta-strands in a S-shaped amyloid fold, and arranged in a manner that generates two hydrophobic cores that are capped at the end of the chain by a salt bridge. The outer surface of the monomers presents hydrophilic side chains to the solvent. The interface between the monomers of the dirner shows clear contacts between M35 of one molecule and L17 and Q15 of the second. Intermolecular 13C-15N constraints demonstrate that the amyloid fibrils are parallel in register. The RMSD of the backbone structure (Q15-A42) is 0.71 +/- 0.12 angstrom and of all heavy atoms is 1.07 +/- 0.08 angstrom. The structure provides a point of departure for the design of drugs that bind to the fibril surface and therefore interfere with secondary nucleation and for other therapeutic approaches to mitigate A beta(42) aggregation.