The complete mitochondrial genome of the Goniopora stokesi

被引：1

作者：

Chen, Wenjing ^{[1
,2
,3
]}

Zhu, Aiyi ^{[3
]}

Tong, Fei ^{[1
,2
]}

Li, Dandan ^{[1
,2
,3
]}

Long, Xinling ^{[1
,2
]}

Chen, Zicong ^{[1
,2
]}

Chen, Pimao ^{[1
,2
,3
]}

机构：

[1] Chinese Acad Fishery Sci, South China Sea Fisheries Res Inst Shenzhen Test, Shenzhen, Peoples R China

[2] Chinese Acad Fishery Sci, South China Sea Fisheries Res Inst, 231 Xingang West Rd, Guangzhou 510220, Guangdong, Peoples R China

[3] Zhejing Ocean Univ, Coll Marine Sci & Technol, Zhoushan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期

关键词：

Goniopora stokesi; mitogenome; coral; ANNOTATION;

D O I：

10.1080/23802359.2019.1574683

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, the complete mitogenome sequence of the Goniopora stokesi, has been sequenced by next-generation sequence method. The overall of Goniopora stokesi mitogenome is 37.25% for A, 23.46% for C, 13.61% for G, and 25.68% for T, as well as 37.07% for low GC. The assembled mitogenome, consisting of 18828 bp, has unique 13 protein-coding genes (PCGs), 2 transfer RNA genes, and 2 ribosomal RNA genes. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis of stony coral phylogeny.

引用

页码：713 / 714

页数：2

共 6 条

[1] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Lagesen, Karin
Hallin, Peter
Rodland, Einar Andreas
Stærfeldt, Hans-Henrik
Rognes, Torbjorn
Ussery, David W.
[J]. NUCLEIC ACIDS RESEARCH, 2007, 35 (09) : 3100 - 3108
[2] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
Lowe, TM
Eddy, SR
[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (05) : 955 - 964
[3] Next-generation sequencing yields the complete mitogenome of massive coral, Porites lutea (Cnidaria: Poritidae)
Niu, Wentao
Lin, Rongcheng
Shi, Xiaofeng
Chen, Ching-Hung
Shen, Kang-Ning
Hsiao, Chung-Der
[J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2016, 1 (01): : 8 - 9
[4] MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Tamura, Koichiro
Peterson, Daniel
Peterson, Nicholas
Stecher, Glen
Nei, Masatoshi
Kumar, Sudhir
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2011, 28 (10) : 2731 - 2739
[5] Veron JEN, 2000, CORALS WORLD
[6] Automatic annotation of organellar genomes with DOGMA
Wyman, SK
Jansen, RK
Boore, JL
[J]. BIOINFORMATICS, 2004, 20 (17) : 3252 - 3255

← 1 →