Single-polymer dynamics under constraints: scaling theory and computer experiment

被引:154
作者
Milchev, Andrey [1 ]
机构
[1] Bulgarian Acad Sci, Inst Phys Chem, BU-1113 Sofia, Bulgaria
关键词
LOG-PERIODIC OSCILLATIONS; MONTE-CARLO SIMULATIONS; QUENCHED RANDOM MEDIUM; DNA-MOLECULES; RANDOM COPOLYMERS; EXCLUDED-VOLUME; LANGEVIN DYNAMICS; BIASED DIFFUSION; TRANSLOCATION; CHAIN;
D O I
10.1088/0953-8984/23/10/103101
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
The relaxation, diffusion and translocation dynamics of single linear polymer chains in confinement is briefly reviewed with emphasis on the comparison between theoretical scaling predictions and observations from experiment or, most frequently, from computer simulations. Besides cylindrical, spherical and slit-like constraints, related problems such as the chain dynamics in a random medium and the translocation dynamics through a nanopore are also considered. Another particular kind of confinement is imposed by polymer adsorption on attractive surfaces or selective interfaces-a short overview of single-chain dynamics is also contained in this survey. While both theory and numerical experiments consider predominantly coarse-grained models of self-avoiding linear chain molecules with typically Rouse dynamics, we also note some recent studies which examine the impact of hydrodynamic interactions on polymer dynamics in confinement. In all of the aforementioned cases we focus mainly on the consequences of imposed geometric restrictions on single-chain dynamics and try to check our degree of understanding by assessing the agreement between theoretical predictions and observations.
引用
收藏
页数:24
相关论文
共 217 条
[1]   Deciphering ionic current signatures of DNA transport through a nanopore [J].
Aksimentiev, Aleksei .
NANOSCALE, 2010, 2 (04) :468-483
[2]   Polymer packaging and ejection in viral capsids: Shape matters [J].
Ali, I. ;
Marenduzzo, D. ;
Yeomans, J. M. .
PHYSICAL REVIEW LETTERS, 2006, 96 (20)
[3]   First-passage distributions in a collective model of anomalous diffusion with tunable exponent [J].
Amitai, Assaf ;
Kantor, Yacov ;
Kardar, Mehran .
PHYSICAL REVIEW E, 2010, 81 (01)
[4]  
[Anonymous], 1991, LOW REYNOLDS NUMBER
[5]  
[Anonymous], 1995, INTRO POLYM PHYS
[6]  
[Anonymous], INST NONLIN SCI
[7]  
ARMBJORNSON T, 2002, J CHEM PHYS, V117, P4063
[8]   Time scale of entropic segregation of flexible polymers in confinement: Implications for chromosome segregation in filamentous bacteria [J].
Arnold, Axel ;
Jun, Suckjoon .
PHYSICAL REVIEW E, 2007, 76 (03)
[9]   Unexpected relaxation dynamics of a self-avoiding polymer in cylindrical confinement [J].
Arnold, Axel ;
Bozorgui, Behnaz ;
Frenkel, Daan ;
Ha, Bae-Yeun ;
Jun, Suckjon .
JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (16)
[10]   Polymer chains in a soft nanotube: A Monte Carlo Study [J].
Avramova, K ;
Milchev, A .
JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (02)