The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

被引：81

作者：

Hammond, S. Austin ^{[1
]}

Warren, Rene L. ^{[1
]}

Vandervalk, Benjamin P. ^{[1
]}

Kucuk, Erdi ^{[1
]}

Khan, Hamza ^{[1
]}

Gibb, Ewan A. ^{[1
]}

Pandoh, Pawan ^{[1
]}

Kirk, Heather ^{[1
]}

Zhao, Yongjun ^{[1
]}

Jones, Martin ^{[1
]}

Mungall, Andrew J. ^{[1
]}

Coope, Robin ^{[1
]}

Pleasance, Stephen ^{[1
]}

Moore, Richard A. ^{[1
]}

Holt, Robert A. ^{[1
]}

Round, Jessica M. ^{[2
]}

Ohora, Sara ^{[2
]}

Walle, Branden V. ^{[2
]}

Veldhoen, Nik ^{[2
]}

Helbing, Caren C. ^{[2
]}

Birol, Inanc ^{[1
]}

机构：

[1] BC Canc Agcy, Canadas Michael Smith Genome Sci Ctr, 570 West 7th Ave Suite 100, Vancouver, BC V5Z 4S6, Canada

[2] Univ Victoria, Dept Biochem & Microbiol, Petch Bldg Room 207,3800 Finnerty Rd, Victoria, BC V8P 5C2, Canada

来源：

NATURE COMMUNICATIONS | 2017年 / 8卷

基金：

美国国家卫生研究院; 加拿大自然科学与工程研究理事会;

关键词：

MULTIPLE SEQUENCE ALIGNMENT; PICEA-GLAUCA GENOME; GENE-EXPRESSION; FROG TADPOLE; REVEALS; RANA; ANNOTATION; EVOLUTION; DNA; IDENTIFICATION;

D O I：

10.1038/s41467-017-01316-7

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Frogs play important ecological roles, and several species are important model organisms for scientific research. The globally distributed Ranidae (true frogs) are the largest frog family, and have substantial evolutionary distance from the model laboratory Xenopus frog species. Unfortunately, there are currently no genomic resources for the former, important group of amphibians. More widely applicable amphibian genomic data is urgently needed as more than two-thirds of known species are currently threatened or are undergoing population declines. We report a 5.8 Gbp (NG50 = 69 kbp) genome assembly of a representative North American bullfrog (Rana [Lithobates] catesbeiana). The genome contains over 22,000 predicted protein-coding genes and 6,223 candidate long noncoding RNAs (lncRNAs). RNA-Seq experiments show thyroid hormone causes widespread transcriptional change among protein-coding and putative lncRNA genes. This initial bullfrog draft genome will serve as a key resource with broad utility including amphibian research, developmental biology, and environmental research.

引用

页数：8

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