A game of tag: MAPS catches up on RNA interactomes

被引:16
作者
Carrier, Marie-Claude [1 ]
Lalaouna, David [1 ]
Masse, Eric [1 ]
机构
[1] Univ Sherbrooke, RNA Grp, Dept Biochem, Sherbrooke, PQ, Canada
关键词
Affinity purification; antisense; MS2; RNA purification; RNA sponge; RNA tag; RybB; RyhB; sRNA; tRNA; ESCHERICHIA-COLI; REGULATORY RNAS; COAT PROTEIN; PURIFICATION; DSRA; IDENTIFICATION; TRANSLATION; GENE; ACTS; ANTISILENCER;
D O I
10.1080/15476286.2016.1156830
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the last few decades, small regulatory RNA (sRNA) molecules emerged as key regulators in every kingdom of life. Resolving the full targetome of sRNAs has however remained a challenge. To address this, we used an in vivo tagging MS2-affinity purification protocol coupled with RNA sequencing technology, namely MAPS, to assemble full bacterial small RNAs targetomes. The impressive potential of MAPS has been supported by a number of reports. Here, we concisely overview RNA-tagging history that preceded the development of the MAPS assay and expose the range of possible uses of this technology.
引用
收藏
页码:473 / 476
页数:4
相关论文
共 39 条
[1]   StreptoTag: A novel method for the isolation of RNA-binding proteins [J].
Bachler, M ;
Schroeder, R ;
von Ahsen, U .
RNA, 1999, 5 (11) :1509-1516
[2]   ROLES OF OPERATOR AND NON-OPERATOR RNA SEQUENCES IN BACTERIOPHAGE R17 CAPSID ASSEMBLY [J].
BECKETT, D ;
WU, HN ;
UHLENBECK, OC .
JOURNAL OF MOLECULAR BIOLOGY, 1988, 204 (04) :939-947
[3]   Localization of ASH1 mRNA particles in living yeast [J].
Bertrand, E ;
Chartrand, P ;
Schaefer, M ;
Shenoy, SM ;
Singer, RH ;
Long, RM .
MOLECULAR CELL, 1998, 2 (04) :437-445
[4]  
Corcoran Colin P, 2012, Methods Mol Biol, V905, P177, DOI 10.1007/978-1-61779-949-5_11
[5]  
De Guzman RN, 1998, BIOPOLYMERS, V48, P181, DOI 10.1002/(SICI)1097-0282(1998)48:2<181::AID-BIP7>3.0.CO
[6]  
2-L
[7]   New insights into small RNA-dependent translational regulation in prokaryotes [J].
Desnoyers, Guillaume ;
Bouchard, Marie-Pier ;
Masse, Eric .
TRENDS IN GENETICS, 2013, 29 (02) :92-98
[8]   Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq [J].
Desnoyers, Guillaume ;
Masse, Eric .
GENES & DEVELOPMENT, 2012, 26 (07) :726-739
[9]   Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations [J].
Gottesman, Susan ;
Storz, Gisela .
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2011, 3 (12)
[10]   GENETIC APPROACH TO FACILITATE PURIFICATION OF RECOMBINANT PROTEINS WITH A NOVEL METAL CHELATE ADSORBENT [J].
HOCHULI, E ;
BANNWARTH, W ;
DOBELI, H ;
GENTZ, R ;
STUBER, D .
BIO-TECHNOLOGY, 1988, 6 (11) :1321-1325