Persistent blood DNA methylation changes one year after SARS-CoV-2 infection

被引:26
作者
Balnis, Joseph [1 ,2 ]
Madrid, Andy [3 ]
Hogan, Kirk J. [4 ]
Drake, Lisa A. [1 ]
Adhikari, Anish [1 ,2 ]
Vancavage, Rachel [1 ,2 ]
Singer, Harold A. [1 ]
Alisch, Reid S. [3 ]
Jaitovich, Ariel [1 ,2 ]
机构
[1] Albany Med Coll, Div Pulm & Crit Care Med, Albany, NY 12208 USA
[2] Albany Med Coll, Dept Mol & Cellular Physiol, 47 New Scotland Ave,MC91, Albany, NY 12208 USA
[3] Albany Med Coll, Dept Neurol Surg, Madison, WI USA
[4] Univ Wisconsin, Sch Med & Publ Hlth, Dept Anesthesiol, Madison, WI USA
基金
美国国家卫生研究院;
关键词
COVID-19; DNA methylation; SARS; PASC;
D O I
10.1186/s13148-022-01313-8
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
We recently reported the COVID-19-induced circulating leukocytes DNA methylation profile. Here, we hypothesized that some of these genes would persist differentially methylated after disease resolution. Fifteen participants previously hospitalized for SARS-CoV-2 infection were epityped one year after discharge. Of the 1505 acute illness-induced differentially methylated regions (DMRs) previously identified, we found 71 regions with persisted differentially methylated, with an average of 7 serial CpG positions per DMR. Sixty-four DMRs persisted hypermethylated, and 7 DMR persisted hypomethylated. These data are the first reported evidence that DNA methylation changes in circulating leukocytes endure long after recovery from acute illness.
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页数:5
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共 26 条
[1]   High-dimensional characterization of post-acute sequelae of COVID-19 [J].
Al-Aly, Ziyad ;
Xie, Yan ;
Bowe, Benjamin .
NATURE, 2021, 594 (7862) :259-+
[2]   Age-associated DNA methylation in pediatric populations [J].
Alisch, Reid S. ;
Barwick, Benjamin G. ;
Chopra, Pankaj ;
Myrick, Leila K. ;
Satten, Glen A. ;
Conneely, Karen N. ;
Warren, Stephen T. .
GENOME RESEARCH, 2012, 22 (04) :623-632
[3]   Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing [J].
Amabile, Angelo ;
Migliara, Alessandro ;
Capasso, Paola ;
Biffi, Mauro ;
Cittaro, Davide ;
Naldini, Luigi ;
Lombardo, Angelo .
CELL, 2016, 167 (01) :219-+
[4]   Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans [J].
Arunachalam, Prabhu S. ;
Wimmers, Florian ;
Mok, Chris Ka Pun ;
Perera, Ranawaka A. P. M. ;
Scott, Madeleine ;
Hagan, Thomas ;
Sigal, Natalia ;
Feng, Yupeng ;
Bristow, Laurel ;
Tsang, Owen Tak-Yin ;
Wagh, Dhananjay ;
Coller, John ;
Pellegrini, Kathryn L. ;
Kazmin, Dmitri ;
Alaaeddine, Ghina ;
Leung, Wai Shing ;
Chan, Jacky Man Chun ;
Chik, Thomas Shiu Hong ;
Choi, Chris Yau Chung ;
Huerta, Christopher ;
McCullough, Michele Paine ;
Lv, Huibin ;
Anderson, Evan ;
Edupuganti, Srilatha ;
Upadhyay, Amit A. ;
Bosinger, Steve E. ;
Maecker, Holden Terry ;
Khatri, Purvesh ;
Rouphael, Nadine ;
Peiris, Malik ;
Pulendran, Bali .
SCIENCE, 2020, 369 (6508) :1210-+
[5]   Blood DNA methylation and COVID-19 outcomes [J].
Balnis, Joseph ;
Madrid, Andy ;
Hogan, Kirk J. ;
Drake, Lisa A. ;
Chieng, Hau C. ;
Tiwari, Anupama ;
Vincent, Catherine E. ;
Chopra, Amit ;
Vincent, Peter A. ;
Robek, Michael D. ;
Singer, Harold A. ;
Alisch, Reid S. ;
Jaitovich, Ariel .
CLINICAL EPIGENETICS, 2021, 13 (01)
[6]   Unique inflammatory profile is associated with higher SARS-CoV-2 acute respiratory distress syndrome (ARDS) mortality [J].
Balnis, Joseph ;
Adam, Alejandro P. ;
Chopra, Amit ;
Chieng, Hau C. ;
Drake, Lisa A. ;
Martino, Nina ;
Ramos, Ramon Bossardi ;
Feustel, Paul J. ;
Overmyer, Katherine A. ;
Shishkova, Evgenia ;
Coon, Joshua J. ;
Singer, Harold A. ;
Judson, Marc A. ;
Jaitovich, Ariel .
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY, INTEGRATIVE AND COMPARATIVE PHYSIOLOGY, 2021, 320 (03) :R250-R257
[7]   Epigenetic Profiling in Severe Sepsis: A Pilot Study of DNA Methylation Profiles in Critical Illness* [J].
Binnie, Alexandra ;
Walsh, Christopher J. ;
Hu, Pingzhao ;
Dwivedi, Dhruva J. ;
Fox-Robichaud, Alison ;
Liaw, Patricia C. ;
Tsang, Jennifer L. Y. ;
Batt, Jane ;
Carrasqueiro, Gabriela ;
Gupta, Sahil ;
Marshall, John C. ;
Castelo-Branco, Pedro ;
dos Santos, Claudia C. .
CRITICAL CARE MEDICINE, 2020, 48 (02) :142-150
[8]   Epigenome-wide association study of COVID-19 severity with respiratory failure [J].
Castro de Moura, Manuel ;
Davalos, Veronica ;
Planas-Serra, Laura ;
Alvarez-Errico, Damiana ;
Arribas, Carles ;
Ruiz, Montserrat ;
Aguilera-Albesa, Sergio ;
Troya, Jesus ;
Valencia-Ramos, Juan ;
Velez-Santamaria, Valentina ;
Rodriguez-Palmero, Agusti ;
Villar-Garcia, Judit ;
Horcajada, Juan P. ;
Albu, Sergiu ;
Casasnovas, Carlos ;
Rull, Anna ;
Reverte, Laia ;
Dietl, Beatriz ;
Dalmau, David ;
Arranz, Maria J. ;
Llucia-Carol, Laia ;
Planas, Anna M. ;
Perez-Tur, Jordi ;
Fernandez-Cadenas, Israel ;
Villares, Paula ;
Tenorio, Jair ;
Colobran, Roger ;
Martin-Nalda, Andrea ;
Soler-Palacin, Pere ;
Vidal, Francesc ;
Pujol, Aurora ;
Esteller, Manel .
EBIOMEDICINE, 2021, 66
[9]   Tissue-Specific Immunopathology in Fatal COVID-19 [J].
Dorward, David A. ;
Russell, Clark D. ;
Um, In Hwa ;
Elshani, Mustafa ;
Armstrong, Stuart D. ;
Penrice-Randal, Rebekah ;
Millar, Tracey ;
Lerpiniere, Chris E. B. ;
Tagliavini, Giulia ;
Hartley, Catherine S. ;
Randle, Nadine P. ;
Gachanja, Naomi N. ;
Potey, Philippe M. D. ;
Dong, Xiaofeng ;
Anderson, Alison M. ;
Campbell, Victoria L. ;
Duguid, Alasdair J. ;
Al Qsous, Wael ;
BouHaidar, Ralph ;
Baillie, J. Kenneth ;
Dhaliwal, Kevin ;
Wallace, William A. ;
Bellamy, Christopher O. C. ;
Prost, Sandrine ;
Smith, Colin ;
Hiscox, Julian A. ;
Harrison, David J. ;
Lucas, Christopher D. .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2021, 203 (02) :192-201
[10]   Epigenetic Clocks Are Not Accelerated in COVID-19 Patients [J].
Franzen, Julia ;
Nuchtern, Selina ;
Tharmapalan, Vithurithra ;
Vieri, Margherita ;
Nikolic, Milos ;
Han, Yang ;
Balfanz, Paul ;
Marx, Nikolaus ;
Dreher, Michael ;
Bruemmendorf, Tim H. ;
Dahl, Edgar ;
Beier, Fabian ;
Wagner, Wolfgang .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (17)