Rewriting Human History and Empowering Indigenous Communities with Genome Editing Tools

被引:10
作者
Fox, Keolu [1 ,2 ]
Rallapalli, Kartik Lakshmi [3 ]
Komor, Alexis C. [3 ]
机构
[1] Univ Calif San Diego, Dept Anthropol, La Jolla, CA 92093 USA
[2] Univ Calif San Diego, Dept Global Hlth, San Diego, CA 92093 USA
[3] Univ Calif San Diego, Dept Chem & Biochem, San Diego, CA 92093 USA
关键词
base editing; population genetics; signatures of natural selection; functional genomics; DOUBLE-STRAND BREAKS; OFF-TARGET; HOMOLOGOUS RECOMBINATION; SEQUENCE VARIANTS; BASE EDITOR; DNA; CRISPR-CAS9; PATTERNS; OBESITY; RISK;
D O I
10.3390/genes11010088
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Appropriate empirical-based evidence and detailed theoretical considerations should be used for evolutionary explanations of phenotypic variation observed in the field of human population genetics (especially Indigenous populations). Investigators within the population genetics community frequently overlook the importance of these criteria when associating observed phenotypic variation with evolutionary explanations. A functional investigation of population-specific variation using cutting-edge genome editing tools has the potential to empower the population genetics community by holding "just-so" evolutionary explanations accountable. Here, we detail currently available precision genome editing tools and methods, with a particular emphasis on base editing, that can be applied to functionally investigate population-specific point mutations. We use the recent identification of thrifty mutations in the CREBRF gene as an example of the current dire need for an alliance between the fields of population genetics and genome editing.
引用
收藏
页数:14
相关论文
共 103 条
[51]   High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects [J].
Kleinstiver, Benjamin P. ;
Pattanayak, Vikram ;
Prew, Michelle S. ;
Tsai, Shengdar Q. ;
Nguyen, Nhu T. ;
Zheng, Zongli ;
Joung, J. Keith .
NATURE, 2016, 529 (7587) :490-+
[52]   Broadening the targeting range of Staphylococcus aureus CRISPR-Cas9 by modifying PAM recognition [J].
Kleinstiver, Benjamin P. ;
Prew, Michelle S. ;
Tsai, Shengdar Q. ;
Nguyen, Nhu T. ;
Topkar, Ved V. ;
Zheng, Zongli ;
Joung, J. Keith .
NATURE BIOTECHNOLOGY, 2015, 33 (12) :1293-+
[53]   Complete mitochondrial DNA genome sequences from the first New Zealanders [J].
Knapp, Michael ;
Horsburgh, K. Ann ;
Prost, Stefan ;
Stanton, Jo-Ann ;
Buckley, Hallie R. ;
Walter, Richard K. ;
Matisoo-Smith, Elizabeth A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (45) :18350-18354
[54]   Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T: A base editors with higher efficiency and product purity [J].
Komor, Alexis C. ;
Zhao, Kevin T. ;
Packer, Michael S. ;
Gaudelli, Nicole M. ;
Waterbury, Amanda L. ;
Koblan, Luke W. ;
Kim, Y. Bill ;
Badran, Ahmed H. ;
Liu, David R. .
SCIENCE ADVANCES, 2017, 3 (08)
[55]   Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage [J].
Komor, Alexis C. ;
Kim, Yongjoo B. ;
Packer, Michael S. ;
Zuris, John A. ;
Liu, David R. .
NATURE, 2016, 533 (7603) :420-+
[56]   Discordant association of the CREBRF rs373863828 A allele with increased BMI and protection from type 2 diabetes in MAori and Pacific (Polynesian) people living in Aotearoa/New Zealand [J].
Krishnan, Mohanraj ;
Major, Tanya J. ;
Topless, Ruth K. ;
Dewes, Ofa ;
Yu, Lennex ;
Thompson, John M. D. ;
McCowan, Lesley ;
de Zoysa, Janak ;
Stamp, Lisa K. ;
Dalbeth, Nicola ;
Hindmarsh, Jennie Harre ;
Rapana, Nuku ;
Deka, Ranjan ;
Eng, Winston W. H. ;
Weeks, Daniel E. ;
Minster, Ryan L. ;
McGarvey, Stephen T. ;
Viali, Satupa'itea ;
Naseri, Take ;
Reupena, Muagututi'a Sefuiva ;
Wilcox, Phillip ;
Grattan, David ;
Shepherd, Peter R. ;
Shelling, Andrew N. ;
Murphy, Rinki ;
Merriman, Tony R. .
DIABETOLOGIA, 2018, 61 (07) :1603-1613
[57]   Base editing with a Cpf1-cytidine deaminase fusion [J].
Li, Xiaosa ;
Wang, Ying ;
Liu, Yajing ;
Yang, Bei ;
Wang, Xiao ;
Wei, Jia ;
Lu, Zongyang ;
Zhang, Yuxi ;
Wu, Jing ;
Huang, Xingxu ;
Yang, Li ;
Chen, Jia .
NATURE BIOTECHNOLOGY, 2018, 36 (04) :324-+
[58]   Correction of β-thalassemia mutant by base editor in human embryos [J].
Liang, Puping ;
Ding, Chenhui ;
Sun, Hongwei ;
Xie, Xiaowei ;
Xu, Yanwen ;
Zhang, Xiya ;
Sun, Ying ;
Xiong, Yuanyan ;
Ma, Wenbin ;
Liu, Yongxiang ;
Wang, Yali ;
Fang, Jianpei ;
Liu, Dan ;
Zhou Songyang ;
Zhou, Canquan ;
Huang, Junjiu .
PROTEIN & CELL, 2017, 8 (11) :811-822
[59]   Effective gene editing by high-fidelity base editor 2 in mouse zygotes [J].
Liang, Puping ;
Sun, Hongwei ;
Ying Sun ;
Zhang, Xiya ;
Xie, Xiaowei ;
Zhang, Jinran ;
Zhen Zhang ;
Chen, Yuxi ;
Ding, Chenhui ;
Xiong, Yuanyan ;
Ma, Wenbin ;
Dan Liu ;
Huang, Junjiu ;
Zhou Songyang .
PROTEIN & CELL, 2017, 8 (08) :601-611
[60]   A time transect of exomes from a Native American population before and after European contact [J].
Lindo, John ;
Huerta-Sanchez, Emilia ;
Nakagome, Shigeki ;
Rasmussen, Morten ;
Petzelt, Barbara ;
Mitchell, Joycelynn ;
Cybulski, Jerome S. ;
Willerslev, Eske ;
DeGiorgio, Michael ;
Malhi, Ripan S. .
NATURE COMMUNICATIONS, 2016, 7