A Dual Level Analysis with Evolutionary Computing and Swarm Models for Classification of Leukemia

被引:2
作者
Prabhakar, Sunil Kumar [1 ]
Ryu, Semin [1 ]
Jeong, In Cheol [1 ]
Won, Dong-Ok [1 ]
机构
[1] Hallym Univ, Dept Artificial Intelligence Convergence, Chunchon 24252, South Korea
基金
新加坡国家研究基金会;
关键词
GREY WOLF OPTIMIZATION; CANCER CLASSIFICATION; GENE SELECTION; TUMOR CLASSIFICATION; CLASS PREDICTION; MICROARRAY DATA; ALGORITHM; DIAGNOSIS;
D O I
10.1155/2022/2052061
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
One of the major reasons of mortality in human beings is cancer, and there is an absolute necessity for doctors to identify and treat a person suffering from it. Leukemia is a group of blood cancers that usually originates in the bone marrow and results in very high number of abnormal cells. For the diagnosis of cancer, microarray data serves as an important clinical application and serves as a great aid to the entire medical community. The dimensionality of the microarray data is too high, and so selection of suitable genes is quite an important step for the improvement of data classification. Therefore, for the prediction and diagnosis of cancer, there is an utmost necessity to select the most informative genes. In this work, Minimum Redundancy Maximum Relevance (MRMR), Signal to Noise Ratio (SNR), Multivariate Error Weight Uncorrelated Shrunken Centroid (EWUSC), and multivariate correlation-based feature selection (CFS) are chosen as initial feature selection techniques. Then, to select the most informative genes, five different kinds of evolutionary optimization techniques too are incorporated here such as African Buffalo Optimization (ABO), Artificial Bee Colony Optimization (ABCO), Cockroach Swarm Optimization (CSO), Imperialist Competitive Optimization (ICO), and Social Spider Optimization (SSO). Finally, the optimized values are fed through classification process and the best results are obtained when multivariate CFS with SSO is utilized and classified with Probabilistic Neural Network (PNN), and a high classification accuracy of 95.70% is obtained.
引用
收藏
页数:16
相关论文
共 56 条
[1]  
Abd El-Nasser A, 2014, 2014 SCIENCE AND INFORMATION CONFERENCE (SAI), P422, DOI 10.1109/SAI.2014.6918222
[2]   Application of an Artificial Neural Network in the Diagnosis of Chronic Lymphocytic Leukemia [J].
Aghamaleki, Fateme Shaabanpour ;
Mollashahi, Behrouz ;
Nosrati, Mokhtar ;
Moradi, Afshin ;
Sheikhpour, Mojgan ;
Movafagh, Abolfazl .
CUREUS JOURNAL OF MEDICAL SCIENCE, 2019, 11 (02)
[3]   Gene selection in cancer classification using PSO/SVM and GA/SVM hybrid algorithms [J].
Alba, Enrique ;
Garcia-Nieto, Jose ;
Jourdan, Laetitia ;
Talbi, El-Ghazali .
2007 IEEE CONGRESS ON EVOLUTIONARY COMPUTATION, VOLS 1-10, PROCEEDINGS, 2007, :284-+
[4]  
Alrefai Nashat., 2019, International Journal of Applied Engineering Research, V14, Number, P4077
[5]  
[Anonymous], 2011, Med J Islamic Repub Iran
[6]   Optimization models for cancer classification: extracting gene interaction information from microarray expression data [J].
Antonov, AV ;
Tetko, IV ;
Mader, MT ;
Budczies, J ;
Mewes, HW .
BIOINFORMATICS, 2004, 20 (05) :644-U145
[7]   A New Hybrid Algorithm Based on Grey Wolf Optimization and Crow Search Algorithm for Unconstrained Function Optimization and Feature Selection [J].
Arora, Sankalap ;
Singh, Harpreet ;
Sharma, Manik ;
Sharma, Sanjeev ;
Anand, Priyanka .
IEEE ACCESS, 2019, 7 :26343-26361
[8]   Chronic myeloid leukemia with complex karyotypes: Prognosis and therapeutic approaches [J].
Asnafi, Ali Amin ;
Zayeri, Zeinab Deris ;
Shahrabi, Saeid ;
Zibara, Kazem ;
Vosughi, Tina .
JOURNAL OF CELLULAR PHYSIOLOGY, 2019, 234 (05) :5798-5806
[9]  
BINET JL, 1981, CANCER-AM CANCER SOC, V48, P198, DOI 10.1002/1097-0142(19810701)48:1<198::AID-CNCR2820480131>3.0.CO
[10]  
2-V