Computational identification of putative common genomic drug and vaccine targets in Mycoplasma genitalium

被引:13
作者
Nogueira, Wylerson G. [1 ]
Jaiswal, Arun Kumar [1 ,3 ]
Tiwari, Sandeep [1 ]
Ramos, Rommel T. J. [2 ]
Ghosh, Preetam [4 ]
Barh, Debmalya [5 ]
Azevedo, Vasco [1 ]
Soares, Siomar C. [3 ]
机构
[1] Univ Fed Minas Gerais, Inst Ciencias Biol, Dept Genet Ecol & Evolucao, Lab Genet Celular & Mol, Belo Horizonte, MG, Brazil
[2] Univ Fed Para, Ctr Genom & Syst Biol, Lab Genom & Bioinformat, Belem, Para, Brazil
[3] Univ Fed Triangulo Mineiro, Dept Immunol Microbiol & Parasitol, Uberaba, MG, Brazil
[4] Virginia Commonwealth Univ, Dept Comp Sci, Richmond, VA 23284 USA
[5] Inst Integrat Omics & Appl Biotechnol IIOAB, Ctr Genom & Appl Gene Technol, Purba Medinipur, W Bengal, India
关键词
Mycoplasma genitalium; Sexually transmitted infections (STIs); Reverse vaccinology; Vaccine candidates; Drug targets; DIACYLGLYCERYL TRANSFERASE LGT; ALKYL HYDROPEROXIDE REDUCTASE; L-PROLINE TRANSPORTER; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; RIBONUCLEOTIDE REDUCTASES; CHROMOSOMAL LOCALIZATION; SALMONELLA-TYPHIMURIUM; RIBOSOMAL-SUBUNIT; ABC TRANSPORTER; P1; ADHESIN;
D O I
10.1016/j.ygeno.2021.06.011
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Mycoplasma genitalium is an obligate intracellular bacterium that is responsible for several sexually transmitted infections, including non-gonococcal urethritis in men and several inflammatory reproductive tract syndromes in women. Here, we applied subtractive genomics and reverse vaccinology approaches for in silico prediction of potential vaccine and drug targets against five strains of M. genitalium. We identified 403 genes shared by all five strains, from which 104 non-host homologous proteins were selected, comprising of 44 exposed/secreted/ membrane proteins and 60 cytoplasmic proteins. Based on the essentiality, functionality, and structure-based binding affinity, we finally predicted 19 (14 novel) putative vaccine and 7 (2 novel) candidate drug targets. The docking analysis showed six molecules from the ZINC database as promising drug candidates against the identified targets. Altogether, both vaccine candidates and drug targets identified here may contribute to the future development of therapeutic strategies to control the spread of M. genitalium worldwide.
引用
收藏
页码:2730 / 2743
页数:14
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