Toxicity inhibition strategy of microplastics to aquatic organisms through molecular docking, molecular dynamics simulation and molecular modification

被引:34
|
作者
Chen, Xinyi [1 ]
Li, Xixi [2 ]
Li, Yu [1 ]
机构
[1] North China Elect Power Univ, Key Lab Resource & Environm Syst Optimizat, Minist Educ, Beijing 102206, Peoples R China
[2] Mem Univ, Northern Reg Persistent Organ Pollut Control NRPO, Fac Engn & Appl Sci, St John, NF, Canada
关键词
Microplastic; Plasticizer; Aquatic toxicity; Full factorial design methods; Molecular dynamics simulation; Molecular docking; STRUCTURE-BASED; 3D-QSAR; DAPHNIA-MAGNA; BINDING; FISH; BIOACCUMULATION; STABILIZERS; COMMON;
D O I
10.1016/j.ecoenv.2021.112870
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
In the present study, the combined toxic effect of microplastics and their additives (five) on aquatic organisms (zebrafish) was studied using full factorial design method, molecular docking, and molecular dynamics (MD) simulation technology. The aquatic toxicity control programmer was designed to improve the optimal combination of plasticizer and microplastics based on the design of environment-friendly phthalic acid ester (PAE) derivatives. First, a total of 64 groups of microplastic-additives were designed using the full factorial design method. Next, the microplastic-additives and aquatic receptor protein were docked together, and the binding energy of these complexes was calculated using the MD simulation method. The results revealed that the aquatic toxicity effects of different microplastic-additive combinations were variable; therefore, the optimal combination of microplastics exhibiting the lowest aquatic toxicity effect could be screened out. Base on the analyzing the bonding effect and surrounded amino acid residues between the microplastic additives and receptor protein, the main driving forces for the binding of the microplastic-additive and the protein were hydrophobic force, hydrogen bonding force and electrostatic force. The main effects and the second-order interaction of the microplastic-additives combination were analyzed using the fixed-effect model. The main additives that affect the aquatic toxicity of the microplastics can be known. In addition, based on the MD simulation of the molecular replacement of PAE derivatives, the optimal level of component combination of low aquatic toxicity effect of microplastics was constructed.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] Toxicity evaluation of microplastics to aquatic organisms through molecular simulations and fractional factorial designs
    Enyoh, Christian Ebere
    Wang, Qingyue
    Ovuoraye, Prosper E.
    Maduka, Tochukwu Oluwatosin
    CHEMOSPHERE, 2022, 308
  • [2] Molecular Docking and Molecular Dynamics Simulation Studies of Toxicity Mechanism of Ciguatoxin
    Zheng Jie
    Zhao Bin
    Yan Hongpeng
    Zhang Kun
    Zhang Dapeng
    Zhao Suqing
    ACTA CHIMICA SINICA, 2011, 69 (17) : 2026 - 2030
  • [3] Molecular docking and molecular dynamics simulation study on the toxicity mechanism of bongkrekic acid
    Li, Hongmei
    Liang, Zhen
    Li, Ying
    Wen, Jiazhen
    Zhang, Rong
    TOXICON, 2023, 223
  • [4] Inhibition of Bioconcentration of Pentachlorobenzene in the Aquatic Food Chain Based on 3D-QSAR, Molecular Docking, and Molecular Dynamics Simulation
    Ruihao Sun
    Wenhui Zhang
    Qing Li
    Yu Li
    Water, Air, & Soil Pollution, 2021, 232
  • [5] Inhibition of Bioconcentration of Pentachlorobenzene in the Aquatic Food Chain Based on 3D-QSAR, Molecular Docking, and Molecular Dynamics Simulation
    Sun, Ruihao
    Zhang, Wenhui
    Li, Qing
    Li, Yu
    WATER AIR AND SOIL POLLUTION, 2021, 232 (02):
  • [6] Screening of Potential Breast Cancer Inhibitors through Molecular Docking and Molecular Dynamics Simulation
    Pandi, Sangavi
    Kulanthaivel, Langeswaran
    Subbaraj, Gowtham Kumar
    Rajaram, Sangeetha
    Subramanian, Senthilkumar
    BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [7] MOLECULAR DOCKING, ADMET, AND MOLECULAR DYNAMICS SIMULATION STUDIES FOR MOLECULES WITH EXPECTED HDAC INHIBITION ACTIVITY
    Mohammed, Zaid Mahmood
    Al-Hamashi, Ayad Abed Ali
    GOMAL JOURNAL OF MEDICAL SCIENCES, 2024, 22 (02): : 164 - 172
  • [8] Inhibition of acetylcholinesterase by two genistein derivatives: kinetic analysis, molecular docking and molecular dynamics simulation
    Fang, Jiansong
    Wu, Ping
    Yang, Ranyao
    Gao, Li
    Li, Chao
    Wang, Dongmei
    Wu, Song
    Liu, Ai-Lin
    Du, Guan-Hua
    ACTA PHARMACEUTICA SINICA B, 2014, 4 (06) : 430 - 437
  • [9] Molecular docking and molecular dynamics simulation decoding molecular mechanism of EDCs binding to hERRγ
    Sun, Ying
    Chen, Lin
    Zhao, Bing
    Wang, Ruige
    JOURNAL OF MOLECULAR MODELING, 2024, 30 (05)
  • [10] Interaction of β-Lactoglobulin with Resveratrol: Molecular Docking and Molecular Dynamics Simulation Studies
    Sahihi, M.
    Ghayeb, Y.
    Bordbar, A. Khalegh
    CHEMICAL AND BIOCHEMICAL ENGINEERING QUARTERLY, 2013, 27 (04) : 417 - 422