The liquid structure of some food aromas: Joint X-ray diffraction, all-atom molecular dynamics and reverse Monte Carlo investigations of dimethyl sulfide, dimethyl disulfide and dimethyl trisulfide

被引:8
作者
Gereben, Orsolya [1 ]
Kohara, Shinji [2 ]
Pusztai, Laszlo [1 ]
机构
[1] Hungarian Acad Sci, Wigner Res Ctr Phys, Inst Solid State Phys & Opt, H-1525 Budapest, Hungary
[2] Japan Synchrotron Radiat Res Inst SPring 8, Res & Utilizat Div, Sayo, Hyogo 6795198, Japan
关键词
Liquid structure; X-ray diffraction; Molecular dynamics simulation; FORCE-FIELD; SIMULATIONS; RMC++;
D O I
10.1016/j.molliq.2012.02.018
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Following synchrotron X-ray diffraction measurements on liquid dimethyl sulfide, dimethyl disulfide and dimethyl trisulfide, all-atom molecular dynamics (MD) simulations were carried out for these materials which are known widely used food aromas. The X-ray weighted structure factor calculated from the MD particle configurations was in reasonably good agreement with the experimental data for each liquid. For refining the structure, series of Reverse Monte Carlo (RMC) simulations using various combinations of the experimental structure factor. MD-based partial radial distribution functions, as well as constraints on cosine distribution of bond angles were carried out. The best representation of the structure could be achieved by the simultaneous application of all the above constraints, thus providing an MD-aided RMC structural model of the three liquids. The largest inconsistency between MD and the experimental structure factor showed up in terms of the S-H partial radial distribution function for dimethyl sulfide and disulfide. The coherency between MD results and the experimental structure factor increased with the number of sulfur atoms in the molecule. It is shown that a great deal of information on the intramolecular structure is contained in the X-ray weighted structure factor, whereas intermolecular correlations are represented to a somewhat lesser extent. (C) 2012 Elsevier B.V. All rights reserved.
引用
收藏
页码:63 / 73
页数:11
相关论文
共 23 条
[1]  
[Anonymous], 1988, COMPUTER SIMULATION
[2]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[3]   THE MOLECULAR STRUCTURE OF DIMETHYLTRISULFIDE, (CH3)2S3 [J].
DONOHUE, J ;
SCHOMAKER, V .
JOURNAL OF CHEMICAL PHYSICS, 1948, 16 (02) :92-96
[4]   A SMOOTH PARTICLE MESH EWALD METHOD [J].
ESSMANN, U ;
PERERA, L ;
BERKOWITZ, ML ;
DARDEN, T ;
LEE, H ;
PEDERSEN, LG .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (19) :8577-8593
[5]   Reverse Monte Carlo modelling of the structure of disordered materials with RMC++: a new implementation of the algorithm in C++ [J].
Evrard, G ;
Pusztai, L .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2005, 17 (05) :S1-S13
[6]  
Gereben O, 2007, J OPTOELECTRON ADV M, V9, P3021
[7]   MOLECULAR-STRUCTURE OF DIMETHYL SULFIDE [J].
IIJIMA, T ;
TSUCHIYA, S ;
KIMURA, M .
BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN, 1977, 50 (10) :2564-2567
[9]   Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids [J].
Jorgensen, WL ;
Maxwell, DS ;
TiradoRives, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (45) :11225-11236
[10]  
Keen D.A., 2010, J PHYS CONDENS MATT, V22