Adaptive mesh enrichment for the Poisson-Boltzmann equation

被引:23
作者
Dyshlovenko, P [1 ]
机构
[1] Ulyanovsk State Tech Univ, Dept Phys, Ulyanovsk 432027, Russia
关键词
adaptive mesh refinement; mesh enrichment; Delaunay triangulation; finite-element method; Poisson-Boltzmann equation; colloidal particles interaction;
D O I
10.1006/jcph.2001.6820
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
An adaptive mesh enrichment procedure for a finite-element solution of the two-dimensional Poisson-Boltzmann equation is described. The mesh adaptation is performed by subdividing the cells using information obtained in the previous step of the solution and next rearranging the mesh to be a Delaunay triangulation. The procedure allows the gradual improvement of the quality of the solution and adjustment of the geometry of the problem. The performance of the proposed approach is illustrated by applying it to the problem of two identical colloidal particles in a symmetric electrolyte. (C) 2001 Academic Press.
引用
收藏
页码:198 / 208
页数:11
相关论文
共 50 条
[21]   Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples [J].
Holst, M ;
Baker, N ;
Wang, F .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2000, 21 (15) :1319-1342
[22]   An accelerated nonlocal Poisson-Boltzmann equation solver for electrostatics of biomolecule [J].
Ying, Jinyong ;
Xie, Dexuan .
INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, 2018, 34 (11)
[23]   Asymptotic analysis of the perturbed Poisson-Boltzmann equation on unbounded domains [J].
Ma, Manjun ;
Ou, Chunhua .
ASYMPTOTIC ANALYSIS, 2015, 91 (02) :125-146
[24]   Asymptotic analysis of the Poisson-Boltzmann equation in biological membrane channels [J].
El Jarroudi, Mustapha ;
Brillard, Alain .
MATHEMATICAL BIOSCIENCES, 2013, 243 (01) :46-56
[25]   A Deep Neural Network Based on ResNet for Predicting Solutions of Poisson-Boltzmann Equation [J].
Kwon, In ;
Jo, Gwanghyun ;
Shin, Kwang-Seong .
ELECTRONICS, 2021, 10 (21)
[26]   Error Estimates for the Iterative Discontinuous Galerkin Method to the Nonlinear Poisson-Boltzmann Equation [J].
Yin, Peimeng ;
Huang, Yunqing ;
Liu, Hailiang .
COMMUNICATIONS IN COMPUTATIONAL PHYSICS, 2018, 23 (01) :168-197
[27]   Approximate solutions to the Poisson-Boltzmann equation in spherical and cylindrical geometry [J].
Tuinier, R .
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 2003, 258 (01) :45-49
[28]   Derivation of the solvation effect-incorporated Poisson-Boltzmann equation [J].
Jon, Jong-Sam ;
Ri, Won-Kwang ;
Sin, Kye-Ryong ;
Son, Yong-Chol ;
Jo, Kwang-Won ;
Pak, Jong-Su ;
Kim, Song-Jin ;
Ri, Ye-Jin ;
An, Yong-Chol .
JOURNAL OF MOLECULAR LIQUIDS, 2022, 351
[29]   Weak formulations of the nonlinear Poisson-Boltzmann equation in biomolecular electrostatics [J].
Iglesias, Jose A. ;
Nakov, Svetoslav .
JOURNAL OF MATHEMATICAL ANALYSIS AND APPLICATIONS, 2022, 511 (01)
[30]   Regularization methods for the Poisson-Boltzmann equation: Comparison and accuracy recovery [J].
Lee, Arum ;
Geng, Weihua ;
Zhao, Shan .
JOURNAL OF COMPUTATIONAL PHYSICS, 2021, 426