Development of a rapid loop-mediated isothermal amplification (LAMP) assay for visual detection of porcine parvovirus (PPV) and its application

被引:7
|
作者
Rajkhowa, S. [1 ]
Choudhury, M. [1 ]
Pegu, S. R. [1 ]
Sarma, D. K. [2 ]
Hussain, I [3 ]
机构
[1] Indian Council Agr Res, Anim Hlth Lab, Natl Res Ctr Pig ICAR NRC Pig, Gauhati 781131, Assam, India
[2] AAU, Dept Microbiol, Gauhati, India
[3] SKUAST Kashmir, Div Vet Microbiol & Immunol, Srinagar, India
关键词
Loop-mediated isothermal amplification; Porcine parvovirus; Sensitivity; Specificity; Visual detection; PIGS;
D O I
10.1007/s42770-021-00569-1
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Porcine parvovirus (PPV) infection is one of the most important causes of reproductive failure in pigs impacting the piggery industry globally with huge economic losses. A cost-effective, simple, rapid, specific, and sensitive method is critical for monitoring PPV infection on pig farms. The main aim of the present study was to develop and evaluate a loop-mediated isothermal amplification (LAMP) assay for rapid visual detection of porcine parvovirus (PPV) in pigs. A set of six LAMP primers including two outer primers, two inner primers, and two loop primers were designed utilizing the conserved region of capsid protein VP2 gene sequences of PPV and was applied for detection of PPV from porcine samples. Time and temperature conditions for amplification of PPV genes were optimized to be 30 min at 63 degrees C. The developed assay was ten-fold more sensitive than conventional PCR with analytical sensitivity of 20 pg and 200 pg, respectively. This is the first report of detection of PPV by LAMP assay from India. The assay did not cross-react with porcine circovirus type 2 (PCV2), porcine reproductive and respiratory syndrome virus (PRRSV), or classical swine fever virus (CSFV). The LAMP assay was assembled into a LAMP assay kit of 20 reactions and was validated in different laboratories in India. The newly developed LAMP assay was proved to be a specific, sensitive, rapid, and simple method for visual detection of PPV which does not require even costly equipments for performing the test. It complements and extends previous methods for PPV detection and provides an alternative approach for detection of PPV.
引用
收藏
页码:1725 / 1732
页数:8
相关论文
共 50 条
  • [21] Development of a loop-mediated isothermal amplification (LAMP) assay for the detection of Anaplasma marginale
    Rodrigo Giglioti
    César Cristiano Bassetto
    Cintia Hiromi Okino
    Henrique Nunes de Oliveira
    Márcia Cristina de Sena Oliveira
    Experimental and Applied Acarology, 2019, 77 : 65 - 72
  • [22] Specific and rapid detection of tilapia parvovirus using loop-mediated isothermal amplification (LAMP) method
    Phusantisampan, Theerawut
    Yamkasem, Jidapa
    Tattiyapong, Puntanat
    Sriariyanun, Malinee
    Surachetpong, Win
    JOURNAL OF FISH DISEASES, 2022, 45 (12) : 1893 - 1898
  • [23] Development and application of a loop-mediated isothermal amplification assay for rapid detection of Pythium helicoides
    Takahashi, Reiko
    Fukuta, Shiro
    Kuroyanagi, Satoru
    Miyake, Noriyuki
    Nagai, Hirofumi
    Kageyama, Koji
    Ishiguro, Yasushi
    FEMS MICROBIOLOGY LETTERS, 2014, 355 (01) : 28 - 35
  • [24] Development of a Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Capripoxviruses
    Das, Amaresh
    Babiuk, Shawn
    McIntosh, Michael T.
    JOURNAL OF CLINICAL MICROBIOLOGY, 2012, 50 (05) : 1613 - 1620
  • [25] Optimization of a loop-mediated isothermal amplification (lamp) assay for the rapid detection of Clostridium perfringens
    Chaudhary, Deepa
    Poudel, Sabin
    Jia, Linan
    Sukumaran, Anuraj Theradiyil
    Zhang, Xue
    Cheng, Wen-Hsing
    Kiess, Aaron S.
    Macklin, Kenneth S.
    Zhang, Li
    JOURNAL OF APPLIED POULTRY RESEARCH, 2025, 34 (02):
  • [26] Development and application of a rapid detection method for Clarireedia spp. using loop-mediated isothermal amplification (LAMP) assay
    Junwen Huang
    Wu Zhang
    Jinyu Yang
    Pinghui Huo
    Xueli Niu
    Tropical Plant Pathology, 2023, 48 : 52 - 61
  • [27] Development and application of a rapid detection method for Clarireedia spp. using loop-mediated isothermal amplification (LAMP) assay
    Huang, Junwen
    Zhang, Wu
    Yang, Jinyu
    Huo, Pinghui
    Niu, Xueli
    TROPICAL PLANT PATHOLOGY, 2023, 48 (01) : 52 - 61
  • [28] Development and Validation of a Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of Glaesserella (Haemophilus) parasuis
    Pilchova, Veronika
    Seinige, Diana
    Hennig-Pauka, Isabel
    Buettner, Kathrin
    Abdulmawjood, Amir
    Kehrenberg, Corinna
    MICROORGANISMS, 2021, 9 (01) : 1 - 16
  • [29] Rapid and visual detection of an isolated and identified goose parvovirus (GPV) strain by a loop-mediated isothermal amplification assay
    Liu, Jun-Ting
    Chen, Yan-Hui
    Pei, Yi-Feng
    Yu, Qian
    Afumba, Ruth
    Dong, Hao
    VETERINARY RESEARCH FORUM, 2023, 14 (01) : 7 - 12
  • [30] Development and application of loop-mediated isothermal amplification (LAMP) for detection of Plasmopara viticola
    Kong, Xiangjiu
    Qin, Wentao
    Huang, Xiaoqing
    Kong, Fanfang
    Schoen, Cor D.
    Feng, Jie
    Wang, Zhongyue
    Zhang, Hao
    SCIENTIFIC REPORTS, 2016, 6