High Resolution Distance Distributions Determined by X-Ray and Neutron Scattering

被引:3
|
作者
Tang, Henry Y. H. [1 ]
Tainer, John A. [1 ,2 ]
Hura, Greg L. [1 ,3 ]
机构
[1] Lawrence Berkeley Natl Lab, Mol Biophys & Integrated Bioimaging, 1 Cyclotron Rd, Berkeley, CA 94720 USA
[2] Univ Texas MD Anderson Canc Ctr, Dept Mol & Cellular Oncol, Houston, TX USA
[3] Univ Calif Santa Cruz, Dept Chem & Biochem, Santa Cruz, CA 95064 USA
来源
BIOLOGICAL SMALL ANGLE SCATTERING: TECHNIQUES, STRATEGIES AND TIPS | 2017年 / 1009卷
关键词
SAXS; Pair distribution; Pair correlation; Protein structure; Resolution; Molecular ruler; SMALL-ANGLE SCATTERING; LIQUID WATER; SAXS; CONFORMATIONS; COMPUTATION; PROTEINS; RANGE;
D O I
10.1007/978-981-10-6038-0_10
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Measuring distances within or between macromolecules is necessary to understand the chemistry that biological systems uniquely enable. In performing their chemistry, biological macromolecules undergo structural changes over distances ranging from atomic to micrometer scales. X-ray and neutron scattering provide three key assets for tackling this challenge. First, they may be conducted on solutions where the macromolecules are free to sample the conformations that enable their chemistry. Second, there are few limitations on chemical environment for experiments. Third, the techniques can inform upon a wide range of distances at once. Thus scattering, particularly recorded at small angles (SAS), has been applied to a large variety of phenomenon. A challenge in interpreting scattering data is that the desired three dimensional distance information is averaged onto one dimension. Furthermore, the scales and variety of phenomenon interrogated have led to an assortment of functions that describe distances and changes thereof. Here we review scattering studies that characterize biological phenomenon at distances ranging from atomic to 50 nm. We also distinguish the distance distribution functions that are commonly used to describe results from these systems. With available X-ray and neutron scattering facilities, bringing the action that occurs at the atomic to the micrometer scale is now reasonably accessible. Notably, the combined distance and dynamic information recorded by SAS is frequently key to connecting structure to biological activity and to improve macromolecular design strategies and outcomes. We anticipate widespread utilization particularly in macromolecular engineering and time-resolved studies where many contrasting experiments are necessary for resolving chemical mechanisms through structural changes.
引用
收藏
页码:167 / 181
页数:15
相关论文
共 50 条
  • [1] X-ray and Neutron Scattering of Water
    Amann-Winkel, Katrin
    Bellissent-Funel, Marie-Claire
    Bove, Livia E.
    Loerting, Thomas
    Nilsson, Anders
    Paciaroni, Alessandro
    Schlesinger, Daniel
    Skinner, Lawrie
    CHEMICAL REVIEWS, 2016, 116 (13) : 7570 - 7589
  • [2] Absolute Intramolecular Distance Measurements with Angstrom-Resolution Using Anomalous Small-Angle X-ray Scattering
    Zettl, Thomas
    Mathew, Rebecca S.
    Seifer, Sonke
    Doniach, Sebastian
    Harbury, Pehr A. B.
    Lipfert, Jan
    NANO LETTERS, 2016, 16 (09) : 5353 - 5357
  • [3] X-ray scattering experiments with high-flux X-ray source coupled rapid mixing microchannel device and their potential for high-flux neutron scattering investigations
    Jain, R.
    Petri, M.
    Kirschbaum, S.
    Feindt, H.
    Steltenkamp, S.
    Sonnenkalb, S.
    Becker, S.
    Griesinger, C.
    Menzel, A.
    Burg, T. P.
    Techert, S.
    EUROPEAN PHYSICAL JOURNAL E, 2013, 36 (09)
  • [4] Contrast variation in X-ray and neutron scattering
    Stuhrmann, Heinrich B.
    JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2007, 40 : S23 - S27
  • [5] Small-Angle X-Ray and Neutron Scattering on Photosynthetic Membranes
    Jakubauskas, Dainius
    Mortensen, Kell
    Jensen, Poul Erik
    Kirkensgaard, Jacob J. K.
    FRONTIERS IN CHEMISTRY, 2021, 9
  • [6] Structural studies of carbons by neutron and x-ray scattering
    Burian, Andrzej
    Dore, John C.
    Jurkiewicz, Karolina
    REPORTS ON PROGRESS IN PHYSICS, 2019, 82 (01)
  • [7] Machine learning on neutron and x-ray scattering and spectroscopies
    Chen, Zhantao
    Andrejevic, Nina
    Drucker, Nathan C.
    Nguyen, Thanh
    Xian, R. Patrick
    Smidt, Tess
    Wang, Yao
    Ernstorfer, Ralph
    Tennant, D. Alan
    Chan, Maria
    Li, Mingda
    CHEMICAL PHYSICS REVIEWS, 2021, 2 (03):
  • [8] Structure and dynamics of polymer nanocomposites studied by X-ray and neutron scattering techniques
    Genix, Anne-Caroline
    Oberdisse, Julian
    CURRENT OPINION IN COLLOID & INTERFACE SCIENCE, 2015, 20 (04) : 293 - 303
  • [9] High resolution soft x-ray microscopy
    Chao, WL
    Anderson, EH
    Denbeaux, G
    Harteneck, B
    Le Gros, M
    Pearson, AL
    Olynick, D
    Attwood, D
    SOFT X-RAY AND EUV IMAGING SYSTEMS, 2000, 4146 : 171 - 175
  • [10] Precipitate characterisation in metallic systems by small-angle X-ray or neutron scattering
    De Geuser, Frederic
    Deschamps, Alexis
    COMPTES RENDUS PHYSIQUE, 2012, 13 (03) : 246 - 256