Hydrophilic interaction liquid chromatography (HILIC) in proteomics

被引:212
作者
Boersema, Paul J. [1 ,2 ]
Mohammed, Shabaz [1 ,2 ]
Heck, Albert J. R. [1 ,2 ]
机构
[1] Bijvoet Ctr Biomol Res, Biomol Mass Spectrometry & Proteom Grp, NL-3584 CA Utrecht, Netherlands
[2] Univ Utrecht, Utrecht Inst Pharmaceut Sci, NL-3584 CA Utrecht, Netherlands
关键词
HILIC; proteomics; post-translational modification; two-dimensional liquid chromatography;
D O I
10.1007/s00216-008-1865-7
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In proteomics, nanoflow multidimensional chromatography is now the gold standard for the separation of complex mixtures of peptides as generated by in-solution digestion of whole-cell lysates. Ideally, the different stationary phases used in multidimensional chromatography should provide orthogonal separation characteristics. For this reason, the combination of strong cation exchange chromatography (SCX) and reversed-phase (RP) chromatography is the most widely used combination for the separation of peptides. Here, we review the potential of hydrophilic interaction liquid chromatography (HILIC) as a separation tool in the multidimensional separation of peptides in proteomics applications. Recent work has revealed that HILIC may provide an excellent alternative to SCX, possessing several advantages in the area of separation power and targeted analysis of protein post-translational modifications.
引用
收藏
页码:151 / 159
页数:9
相关论文
共 83 条
[1]   Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis [J].
Aivaliotis, Michalis ;
Gevaert, Kris ;
Falb, Michaela ;
Tebbe, Andreas ;
Konstantinidis, Kosta ;
Bisle, Birgit ;
Klein, Christian ;
Martens, Lennart ;
Staes, An ;
Timmerman, Evy ;
Van Damme, Jozef ;
Siedler, Frank ;
Pfeiffer, Friedhelm ;
Vandekerckhove, Joel ;
Oesterhelt, Dieter .
JOURNAL OF PROTEOME RESEARCH, 2007, 6 (06) :2195-2204
[2]   HYDROPHILIC-INTERACTION CHROMATOGRAPHY FOR THE SEPARATION OF PEPTIDES, NUCLEIC-ACIDS AND OTHER POLAR COMPOUNDS [J].
ALPERT, AJ .
JOURNAL OF CHROMATOGRAPHY, 1990, 499 :177-196
[3]   CATION-EXCHANGE CHROMATOGRAPHY OF PEPTIDES ON POLY(2-SULFOETHYL ASPARTAMIDE)-SILICA [J].
ALPERT, AJ ;
ANDREWS, PC .
JOURNAL OF CHROMATOGRAPHY, 1988, 443 :85-96
[4]  
ALPERT AJ, 2007, 55 ASMS C MASS SPECT
[5]   Electrostatic repulsion hydrophilic interaction chromatography for isocratic separation of charged solutes and selective isolation of phosphopeptides [J].
Alpert, Andrew J. .
ANALYTICAL CHEMISTRY, 2008, 80 (01) :62-76
[6]   On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database [J].
Apweiler, R ;
Hermjakob, H ;
Sharon, N .
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 1999, 1473 (01) :4-8
[7]   Large-scale characterization of HeLa cell nuclear phosphoproteins [J].
Beausoleil, SA ;
Jedrychowski, M ;
Schwartz, D ;
Elias, JE ;
Villén, J ;
Li, JX ;
Cohn, MA ;
Cantley, LC ;
Gygi, SP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (33) :12130-12135
[8]   Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis [J].
Benschop, Joris J. ;
Mohammed, Shabaz ;
O'Flaherty, Martina ;
Heck, Albert J. R. ;
Slijper, Monique ;
Menke, Frank L. H. .
MOLECULAR & CELLULAR PROTEOMICS, 2007, 6 (07) :1198-1214
[9]   Evaluation and optimization of ZIC-HILIC-RP as an alternative MudPIT strategy [J].
Boersema, Paul J. ;
Divecha, Nullin ;
Heck, Albert J. R. ;
Mohammed, Shabaz .
JOURNAL OF PROTEOME RESEARCH, 2007, 6 (03) :937-946
[10]   A high-quality catalog of the Drosophila melanogaster proteome [J].
Brunner, Erich ;
Ahrens, Christian H. ;
Mohanty, Sonali ;
Baetschmann, Hansruedi ;
Loevenich, Sandra ;
Potthast, Frank ;
Deutsch, Eric W. ;
Panse, Christian ;
de Lichtenberg, Ulrik ;
Rinner, Oliver ;
Lee, Hookeun ;
Pedrioli, Patrick G. A. ;
Malmstrom, Johan ;
Koehler, Katja ;
Schrimpf, Sabine ;
Krijgsveld, Jeroen ;
Kregenow, Floyd ;
Heck, Albert J. R. ;
Hafen, Ernst ;
Schlapbach, Ralph ;
Aebersold, Ruedi .
NATURE BIOTECHNOLOGY, 2007, 25 (05) :576-583